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(-) Description

Title :  NUCLEOTIDE-FREE DYNAMIN 1-LIKE PROTEIN (DNM1L, DRP1, DLP1)
 
Authors :  C. Froehlich, D. Schwefel, K. Faelber, O. Daumke
Date :  11 Mar 13  (Deposition) - 24 Apr 13  (Release) - 22 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.48
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Hydrolase, G Protein, Mitochondrial Fission, Membrane Remodeling, Apoptosis (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Frohlich, S. Grabiger, D. Schwefel, K. Faelber, E. Rosenbaum, J. Mears, O. Rocks, O. Daumke
Structural Insights Into Oligomerization And Mitochondrial Remodelling Of Dynamin 1-Like Protein.
Embo J. V. 32 1280 2013
PubMed-ID: 23584531  |  Reference-DOI: 10.1038/EMBOJ.2013.74

(-) Compounds

Molecule 1 - DYNAMIN 1-LIKE PROTEIN
    ChainsA, B, C, D
    EC Number3.6.5.5
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidMODIFIED PET28A
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantROSETTA
    Expression System Vector TypePLASMID
    FragmentDNM1L DELTA B INSERT, RESIDUES 1-516,632-725
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymDNM1P/VPS1P-LIKE PROTEIN, DVLP, DYNAMIN FAMILY MEMBER PROLINE-RICH CARBOXYL-TERMINAL DOMAIN LESS, DYMPLE, DYNAMIN-LIKE PROTEIN, DYNAMIN-LIKE PROTEIN 4, DYNAMIN-LIKE PROTEIN IV, HDYNIV, DYNAMIN-RELATED PROTEIN 1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4BEJ)

(-) Sites  (0, 0)

(no "Site" information available for 4BEJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BEJ)

(-) Cis Peptide Bonds  (15, 15)

Asymmetric Unit
No.Residues
1Val A:85 -Glu A:86
2Cys A:361 -Gly A:362
3Leu A:455 -Arg A:456
4Ser B:71 -Gln B:72
5Ala B:222 -Gly B:223
6Asp B:225 -Ala B:226
7Arg B:233 -Val B:234
8Gly B:323 -Glu B:324
9Gly B:362 -Gly B:363
10Asp B:503 -Ala B:504
11Arg C:233 -Val C:234
12Asp C:382 -Pro C:383
13Lys D:152 -Val D:153
14Asp D:382 -Pro D:383
15Leu D:384 -Gly D:385

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (5, 20)

Asymmetric Unit (5, 20)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_022446S71TDNM1L_HUMANPolymorphism1064610A/B/C/DS71T
2UniProtVAR_076316G362DDNM1L_HUMANUnclassified (EMPF1)879255685A/B/C/DG362D
3UniProtVAR_076317G362SDNM1L_HUMANDisease (EMPF1)  ---A/B/C/DG362S
4UniProtVAR_063704A395DDNM1L_HUMANDisease (EMPF1)121908531A/B/C/DA395D
5UniProtVAR_030489E426DDNM1L_HUMANPolymorphism2389105A/B/C/DE426D

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (5, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_022446S71TDNM1L_HUMANPolymorphism1064610A/BS71T
2UniProtVAR_076316G362DDNM1L_HUMANUnclassified (EMPF1)879255685A/BG362D
3UniProtVAR_076317G362SDNM1L_HUMANDisease (EMPF1)  ---A/BG362S
4UniProtVAR_063704A395DDNM1L_HUMANDisease (EMPF1)121908531A/BA395D
5UniProtVAR_030489E426DDNM1L_HUMANPolymorphism2389105A/BE426D

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (5, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_022446S71TDNM1L_HUMANPolymorphism1064610C/DS71T
2UniProtVAR_076316G362DDNM1L_HUMANUnclassified (EMPF1)879255685C/DG362D
3UniProtVAR_076317G362SDNM1L_HUMANDisease (EMPF1)  ---C/DG362S
4UniProtVAR_063704A395DDNM1L_HUMANDisease (EMPF1)121908531C/DA395D
5UniProtVAR_030489E426DDNM1L_HUMANPolymorphism2389105C/DE426D

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 12)

Asymmetric Unit (3, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1G_DYNAMIN_2PS51718 Dynamin-type guanine nucleotide-binding (G) domain profile.DNM1L_HUMAN22-302
 
 
 
  4A:22-302
B:22-302
C:22-302
D:22-302
2G_DYNAMIN_1PS00410 Dynamin-type guanine nucleotide-binding (G) domain signature.DNM1L_HUMAN51-60
 
 
 
  4A:51-60
B:51-60
C:51-60
D:51-60
3GEDPS51388 GED domain profile.DNM1L_HUMAN644-735
 
 
 
  4A:618-703
B:618-703
C:618-704
D:618-705
Biological Unit 1 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1G_DYNAMIN_2PS51718 Dynamin-type guanine nucleotide-binding (G) domain profile.DNM1L_HUMAN22-302
 
 
 
  2A:22-302
B:22-302
-
-
2G_DYNAMIN_1PS00410 Dynamin-type guanine nucleotide-binding (G) domain signature.DNM1L_HUMAN51-60
 
 
 
  2A:51-60
B:51-60
-
-
3GEDPS51388 GED domain profile.DNM1L_HUMAN644-735
 
 
 
  2A:618-703
B:618-703
-
-
Biological Unit 2 (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1G_DYNAMIN_2PS51718 Dynamin-type guanine nucleotide-binding (G) domain profile.DNM1L_HUMAN22-302
 
 
 
  2-
-
C:22-302
D:22-302
2G_DYNAMIN_1PS00410 Dynamin-type guanine nucleotide-binding (G) domain signature.DNM1L_HUMAN51-60
 
 
 
  2-
-
C:51-60
D:51-60
3GEDPS51388 GED domain profile.DNM1L_HUMAN644-735
 
 
 
  2-
-
C:618-704
D:618-705

(-) Exons   (0, 0)

(no "Exon" information available for 4BEJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:540
 aligned with DNM1L_HUMAN | O00429 from UniProtKB/Swiss-Prot  Length:736

    Alignment length:729
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720         
          DNM1L_HUMAN     1 MEALIPVINKLQDVFNTVGADIIQLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVSQEDKRKTTGEENGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTDAMDVLMGRVIPVKLGIIGVVNRSQLDINNKKSVTDSIRDEYAFLQKKYPSLANRNGTKYLARTLNRLLMHHIRDCLPELKTRINVLAAQYQSLLNSYGEPVDDKSATLLQLITKFATEYCNTIEGTAKYIETSELCGGARICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELPSAVSRDKSSKVPSALAPASQEPSPAASAEADGKLIQDSRRETKNVASGGGGVGDGVQEPTTGNWRGMLKTSKAEELLAEEKSKPIPIMPASPQKGHAVNLLDVPVPVARKLSAREQRDCEVIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDTLQSELVGQLYKSSLLDDLLTESEDMAQRRKEAADMLKALQGASQIIAE 729
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh....hhhhh...eeeeee.hhhhhhhhhhhhhh.......---.....eeeeeee..-------------.....eeee.........hhhhhhhhhhhhhhhh------.....eeeeeee.....eeeee......--------.hhhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhhhhh.....eeeeeehhhhh....hhhhhhh--.......eee........----.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh---------..hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh.------hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.hhhhh..----...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh..--------------------------------------------------------------------------------------------------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) ----------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D--------------------------------D------------------------------D--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                PROSITE (1) ---------------------G_DYNAMIN_2  PDB: A:22-302 UniProt: 22-302                                                                                                                                                                                                                                               -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GED  PDB: A:618-703 UniProt: 644-735                                                   PROSITE (1)
                PROSITE (2) --------------------------------------------------G_DYNAMIN_--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bej A   1 MEALIPVINKLQDVFNTVGADIIQLPQIVVVGTQSSGKSSVLESLVGRDLLPRG---VTRRPLILQLVHVS-------------VEAEEWGKFLHTKNKLYTDFDEIRQEIENETERI------VSPEPIHLKIFSPNVVNLTLVDLPGMTK--------DIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTDAMDVLM--VIPVKLGIIGVVNRSQLD----KSVTDSIRDEYAFLQKKYPSLANRNGTKYLARTLNRLLMHHIRDCLPELKTRINVLAAQYQSLLNSYGEPVDDKSATLLQLITKFATEYCNTIEG---------LCGGARICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATA------VPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNY----LLRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGL--------------------------------------------------------------------------------------------------------------------------------------RDCEVIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDTLQSELVGQLYKSSLLDDLLTESEDMAQRRKEAADMLKALQGASQIIAE 703
                                    10        20        30        40        50   |   |60        70|        -    |   90       100       110       | -    |  130       140       150 |       -|      170       180       190       200       210       220       230|  |   240       250|    | 260       270       280       290       300       310       320       330       340       350       360       370       380       390       400|      410       420       430       440        |-   |   460       470       480       490       500      |  -         -         -         -         -         -         -         -         -         -         -         -         -         - |     624       634       644       654       664       674       684       694         
                                                                                54  58           71            85                              118    125                        152      161                                                                   231  |              251  256                                                                                           350       360                                      401    408                                      449  454                                                  507                                                                                                                                    616                                                                                       
                                                                                                                                                                                                                                                                   234                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               

Chain B from PDB  Type:PROTEIN  Length:547
 aligned with DNM1L_HUMAN | O00429 from UniProtKB/Swiss-Prot  Length:736

    Alignment length:729
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720         
          DNM1L_HUMAN     1 MEALIPVINKLQDVFNTVGADIIQLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVSQEDKRKTTGEENGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTDAMDVLMGRVIPVKLGIIGVVNRSQLDINNKKSVTDSIRDEYAFLQKKYPSLANRNGTKYLARTLNRLLMHHIRDCLPELKTRINVLAAQYQSLLNSYGEPVDDKSATLLQLITKFATEYCNTIEGTAKYIETSELCGGARICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELPSAVSRDKSSKVPSALAPASQEPSPAASAEADGKLIQDSRRETKNVASGGGGVGDGVQEPTTGNWRGMLKTSKAEELLAEEKSKPIPIMPASPQKGHAVNLLDVPVPVARKLSAREQRDCEVIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDTLQSELVGQLYKSSLLDDLLTESEDMAQRRKEAADMLKALQGASQIIAE 729
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh..hhhhh...eeeeee.hhhhhhhhhhhhhh...............eeeeeee....----------......eeee......ee.hhhhhhhhhhhhhhh..----......eeeeeee.....eeeee......-------..hhhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhhhhh.....eeeeeehhhhh.....hhhhhh.........eee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.----------..hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh------hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..-----..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........-----------------------------------------------------------------------------------------------------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.---.hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) ----------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D--------------------------------D------------------------------D--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                PROSITE (1) ---------------------G_DYNAMIN_2  PDB: B:22-302 UniProt: 22-302                                                                                                                                                                                                                                               -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GED  PDB: B:618-703 UniProt: 644-735                                                   PROSITE (1)
                PROSITE (2) --------------------------------------------------G_DYNAMIN_--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bej B   1 MEALIPVINKLQDVFNTVGADIIQLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVSQE----------GVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERIS----GVSPEPIHLKIFSPNVVNLTLVDLPGMTK-------KDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTDAMDVLMGRVIPVKLGIIGVVNRSQLDINNKKSVTDSIRDEYAFLQKKYPSLANRNGTKYLARTLNRLLMHHIRDCLPELKTRINVLAAQYQSLLNSYGEPVDDKSATLLQLITKFATEYCNTIEG----------CGGARICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATA------VPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNY-----LRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDFADA-----------------------------------------------------------------------------------------------------------------------------------------RDCEVIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDTLQSELVGQLYKSSLLDDLLT---DMAQRRKEAADMLKALQGASQIIAE 703
                                    10        20        30        40        50        60        70  |      -   |    90       100       110        |-   |   130       140       150 |     160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350         -|      370       380       390       400|      410       420       430       440        |-    |  460       470       480       490       500   |     -         -         -         -         -         -         -         -         -         -         -         -         -         - |     624       634       644       654       664       674|   |  684       694         
                                                                                                   73         84                                119  124                         152     160                                                                                                                                                                                           350        361                                     401    408                                      449   455                                              504                                                                                                                                       616                                                        675 679                        

Chain C from PDB  Type:PROTEIN  Length:534
 aligned with DNM1L_HUMAN | O00429 from UniProtKB/Swiss-Prot  Length:736

    Alignment length:730
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730
          DNM1L_HUMAN     1 MEALIPVINKLQDVFNTVGADIIQLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVSQEDKRKTTGEENGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTDAMDVLMGRVIPVKLGIIGVVNRSQLDINNKKSVTDSIRDEYAFLQKKYPSLANRNGTKYLARTLNRLLMHHIRDCLPELKTRINVLAAQYQSLLNSYGEPVDDKSATLLQLITKFATEYCNTIEGTAKYIETSELCGGARICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELPSAVSRDKSSKVPSALAPASQEPSPAASAEADGKLIQDSRRETKNVASGGGGVGDGVQEPTTGNWRGMLKTSKAEELLAEEKSKPIPIMPASPQKGHAVNLLDVPVPVARKLSAREQRDCEVIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDTLQSELVGQLYKSSLLDDLLTESEDMAQRRKEAADMLKALQGASQIIAEI 730
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh............eeeeee.hhhhhhhhhhhhhh........--.....eeeeeee..----------------..eeee.........hhhhhhhhhhhhhhhh-----......eeeeeee.....eeeee...............hhhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhhhhh.....eeeeeehhhhh.....hhhhhh.........eee......-----..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...--hhhhhhhhhhhhhhhhhhhhh.---------.hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh--------hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...----..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........-------------------------------------------------------------------------------------------------------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..------hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) ----------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D--------------------------------D------------------------------D---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                PROSITE (1) ---------------------G_DYNAMIN_2  PDB: C:22-302 UniProt: 22-302                                                                                                                                                                                                                                               -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GED  PDB: C:618-704 UniProt: 644-735                                                    PROSITE (1)
                PROSITE (2) --------------------------------------------------G_DYNAMIN_---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bej C   1 MEALIPVINKLQDVFNTVGADIIQLPQIVVVGTQSSGKSSVLESLVGRDLLPRGT--VTRRPLILQLVHVS----------------EEWGKFLHTKNKLYTDFDEIRQEIENETERI-----GVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTDAMDVLMGRVIPVKLGIIGVVNRSQ-----KKSVTDSIRDEYAFLQKKYPSLANRNGTKYLARTLNRLLMHHIRDCLPELKTRINVLAAQYQSLLNSYGEPV--KSATLLQLITKFATEYCNTIEG---------LCGGARICYIFHETFGRTLESVDPLGGLNTIDILTAIRNA--------VPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYS----LRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDFAD-------------------------------------------------------------------------------------------------------------------------------------------DCEVIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDTLQSELVGQLYKSSLLDDLLTE------RRKEAADMLKALQGASQIIAEI 704
                                    10        20        30        40        50    |  |60        70|        -       |90       100       110       | -   |   130       140       150       160       170       180       190       200       210       220       230       240        |-    |  260       270       280       290       300       310       320     | 330       340       350       360       370       380       390        |-       410       420       430       440       450    |  460       470       480       490       500  |      -         -         -         -         -         -         -         -         -         -         -         -         -         -  |    624       634       644       654       664       674 |     684       694       704
                                                                                 55 58           71               88                           118   124                                                                                                                          249   255                                                                    326  |                  350       360                                    399      408                                       450  455                                             503                                                                                                                                         617                                                        676    683                     
                                                                                                                                                                                                                                                                                                                                                                  329                                                                                                                                                                                                                                                                                                                                                                                                                 

Chain D from PDB  Type:PROTEIN  Length:540
 aligned with DNM1L_HUMAN | O00429 from UniProtKB/Swiss-Prot  Length:736

    Alignment length:731
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730 
          DNM1L_HUMAN     1 MEALIPVINKLQDVFNTVGADIIQLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVSQEDKRKTTGEENGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTDAMDVLMGRVIPVKLGIIGVVNRSQLDINNKKSVTDSIRDEYAFLQKKYPSLANRNGTKYLARTLNRLLMHHIRDCLPELKTRINVLAAQYQSLLNSYGEPVDDKSATLLQLITKFATEYCNTIEGTAKYIETSELCGGARICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATGPRPALFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNYSTQELLRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDFADACGLMNNNIEEQRRNRLARELPSAVSRDKSSKVPSALAPASQEPSPAASAEADGKLIQDSRRETKNVASGGGGVGDGVQEPTTGNWRGMLKTSKAEELLAEEKSKPIPIMPASPQKGHAVNLLDVPVPVARKLSAREQRDCEVIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDTLQSELVGQLYKSSLLDDLLTESEDMAQRRKEAADMLKALQGASQIIAEIR 731
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...hhhhh...eeeeee.hhhhhhhhhhhhhh.....-----.....eeeeeee..----------------..eeee.........hhhhhhhhhhhhhhh-------.....eeeeeee.....eeeee.......-----.hhhhhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhhhhh.....eeeeee....hhhhh.hhhhhh.........eee....hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.-----hhhhhhhhhhhhhhhhhhhhh.-------...hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh----..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..----...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........------------------------------------------------------------------------------------------------------------------------------------------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ----------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D--------------------------------D------------------------------D----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                PROSITE (1) ---------------------G_DYNAMIN_2  PDB: D:22-302 UniProt: 22-302                                                                                                                                                                                                                                               -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GED  PDB: D:618-705 UniProt: 644-735                                                     PROSITE (1)
                PROSITE (2) --------------------------------------------------G_DYNAMIN_----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bej D   1 MEALIPVINKLQDVFNTVGADIIQLPQIVVVGTQSSGKSSVLESLVGRDLLP-----VTRRPLILQLVHVS----------------EEWGKFLHTKNKLYTDFDEIRQEIENETER-------VSPEPIHLKIFSPNVVNLTLVDLPGMTKV-----PKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTDAMDVLMGRVIPVKLGIIGVVNRSQLDINNKKSVTDSIRDEYAFLQKKYPSLANRNGTKYLARTLNRLLMHHIRDCLPELKTRINVLAAQYQSLLNSYG-----KSATLLQLITKFATEYCNTIEG-------SELCGGARICYIFHETFGRTLESVDPLGGLNTIDILTAIRNATA----LFVPEVSFELLVKRQIKRLEEPSLRCVELVHEEMQRIIQHCSNY----LLRFPKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDFA------------------------------------------------------------------------------------------------------------------------------------------QRDCEVIERLIKSYFLIVRKNIQDSVPKAVMHFLVNHVKDTLQSELVGQLYKSSLLDDLLTESEDMAQRRKEAADMLKALQGASQIIAEIR 705
                                    10        20        30        40        50 |     |60        70|        -       |90       100       110      |  -    |  130       140       150  |    160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320  |    330       340       350       360       370       380       390       400|    | 410       420       430       440        |-   |   460       470       480       490       500 |       -         -         -         -         -         -         -         -         -         -         -         -         -         -|      624       634       644       654       664       674       684       694       704 
                                                                              52    58           71               88                          117     125                         153   159                                                                                                                                                                 323   329                  350     358                                        401  406                                        449  454                                             502                                                                                                                                        615                                                                                          

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BEJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BEJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BEJ)

(-) Gene Ontology  (53, 53)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (DNM1L_HUMAN | O00429)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0031625    ubiquitin protein ligase binding    Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
    GO:0006921    cellular component disassembly involved in execution phase of apoptosis    The breakdown of structures such as organelles, proteins, or other macromolecular structures during apoptosis.
    GO:0003374    dynamin family protein polymerization involved in mitochondrial fission    The process of creating dynamin protein family polymers, compounds composed of a large number of dynamin family monomers around a lipid tube of a dividing mitochondrion. Dynamin polymers form around lipid tubes and contribute to membrane fission.
    GO:0006897    endocytosis    A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
    GO:0060047    heart contraction    The multicellular organismal process in which the heart decreases in volume in a characteristic way to propel blood through the body.
    GO:0061025    membrane fusion    The membrane organization process that joins two lipid bilayers to form a single membrane.
    GO:0000266    mitochondrial fission    The division of a mitochondrion within a cell to form two or more separate mitochondrial compartments.
    GO:0043653    mitochondrial fragmentation involved in apoptotic process    The change in the morphology of the mitochondria in an apoptotic cell from a highly branched network to a fragmented vesicular form.
    GO:0090149    mitochondrial membrane fission    A process that is carried out at the cellular level which results in the separation of a single continuous mitochondrial membrane into two membranes and contributes to mitochondrial fission.
    GO:0070584    mitochondrion morphogenesis    The process in which the anatomical structures of a mitochondrion are generated and organized.
    GO:0070266    necroptotic process    A programmed necrotic cell death process which begins when a cell receives a signal (e.g. a ligand binding to a death receptor or to a Toll-like receptor), and proceeds through a series of biochemical events (signaling pathways), characterized by activation of receptor-interacting serine/threonine-protein kinase 1 and/or 3 (RIPK1/3, also called RIP1/3) and by critical dependence on mixed lineage kinase domain-like (MLKL), and which typically lead to common morphological features of necrotic cell death. The process ends when the cell has died. The process is divided into a signaling phase, and an execution phase, which is triggered by the former.
    GO:0016559    peroxisome fission    The division of a mature peroxisome within a cell to form two or more separate peroxisome compartments.
    GO:0043065    positive regulation of apoptotic process    Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process.
    GO:2001244    positive regulation of intrinsic apoptotic signaling pathway    Any process that activates or increases the frequency, rate or extent of intrinsic apoptotic signaling pathway.
    GO:0090141    positive regulation of mitochondrial fission    Any process that increases the rate, frequency or extent of mitochondrial fission. Mitochondrial fission is the division of a mitochondrion within a cell to form two or more separate mitochondrial compartments.
    GO:0050714    positive regulation of protein secretion    Any process that activates or increases the frequency, rate or extent of the controlled release of a protein from a cell.
    GO:0090200    positive regulation of release of cytochrome c from mitochondria    Any process that increases the rate, frequency or extent of release of cytochrome c from mitochondria, the process in which cytochrome c is enabled to move from the mitochondrial intermembrane space into the cytosol, which is an early step in apoptosis and leads to caspase activation.
    GO:0012501    programmed cell death    A process which begins when a cell receives an internal or external signal and activates a series of biochemical events (signaling pathway). The process ends with the death of the cell.
    GO:0051289    protein homotetramerization    The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
    GO:0070585    protein localization to mitochondrion    A process in which a protein is transported to, or maintained in, a location within the mitochondrion.
    GO:1903578    regulation of ATP metabolic process    Any process that modulates the frequency, rate or extent of ATP metabolic process.
    GO:0010821    regulation of mitochondrion organization    Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a mitochondrion.
    GO:1903146    regulation of mitophagy    Any process that modulates the frequency, rate or extent of mitochondrion degradation (mitophagy).
    GO:1900063    regulation of peroxisome organization    Any process that modulates the frequency, rate or extent of peroxisome organization.
    GO:0032459    regulation of protein oligomerization    Any process that modulates the frequency, rate or extent of protein oligomerization.
    GO:0001836    release of cytochrome c from mitochondria    The process that results in the movement of cytochrome c from the mitochondrial intermembrane space into the cytosol, which is part of the apoptotic signaling pathway and leads to caspase activation.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0005903    brush border    The dense covering of microvilli on the apical surface of a epithelial cells in tissues such as the intestine, kidney, and choroid plexus; the microvilli aid absorption by increasing the surface area of the cell.
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0005905    clathrin-coated pit    A part of the endomembrane system in the form of an invagination of a membrane upon which a clathrin coat forms, and that can be converted by vesicle budding into a clathrin-coated vesicle. Coated pits form on the plasma membrane, where they are involved in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane, in the trans-Golgi network, and on some endosomes.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0031410    cytoplasmic vesicle    A vesicle found in the cytoplasm of a cell.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0012505    endomembrane system    A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles.
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005874    microtubule    Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
    GO:0015630    microtubule cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins.
    GO:0005741    mitochondrial outer membrane    The outer, i.e. cytoplasm-facing, lipid bilayer of the mitochondrial envelope.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.
    GO:0005777    peroxisome    A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
    GO:0045202    synapse    The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
    GO:0030672    synaptic vesicle membrane    The lipid bilayer surrounding a synaptic vesicle.

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    Ala B:222 - Gly B:223   [ RasMol ]  
    Arg B:233 - Val B:234   [ RasMol ]  
    Arg C:233 - Val C:234   [ RasMol ]  
    Asp B:225 - Ala B:226   [ RasMol ]  
    Asp B:503 - Ala B:504   [ RasMol ]  
    Asp C:382 - Pro C:383   [ RasMol ]  
    Asp D:382 - Pro D:383   [ RasMol ]  
    Cys A:361 - Gly A:362   [ RasMol ]  
    Gly B:323 - Glu B:324   [ RasMol ]  
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    Leu A:455 - Arg A:456   [ RasMol ]  
    Leu D:384 - Gly D:385   [ RasMol ]  
    Lys D:152 - Val D:153   [ RasMol ]  
    Ser B:71 - Gln B:72   [ RasMol ]  
    Val A:85 - Glu A:86   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DNM1L_HUMAN | O004293w6n 3w6o 3w6p 4h1u 4h1v

(-) Related Entries Specified in the PDB File

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