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(-) Description

Title :  STRUCTURE OF THE ATYPICAL C1 DOMAIN OF MGCRACGAP
 
Authors :  V. E. Pye, S. Lekomtsev, M. Petronczki, P. Cherepanov
Date :  09 Aug 12  (Deposition) - 12 Dec 12  (Release) - 23 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Signaling Protein, Cytokinesis, Plasma Membrane, Phospholipids, Centralspindlin, Spindle Midzone, Central Spindle, Midbody (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Lekomtsev, K. Su, V. E. Pye, K. Blight, S. Sundaramoorthy, T. Takaki L. M. Collinson, P. Cherepanov, N. Divecha, M. Petronczki
Centralspindlin Links The Mitotic Spindle To The Plasma Membrane During Cytokinesis.
Nature V. 492 276 2012
PubMed-ID: 23235882  |  Reference-DOI: 10.1038/NATURE11773

(-) Compounds

Molecule 1 - RAC GTPASE-ACTIVATING PROTEIN 1
    ChainsA, B, C, D, E, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGEX-C1WT
    Expression System StrainBL21 (DE3)
    Expression System Taxid469008
    Expression System VariantCODON PLUS RIL
    Expression System VectorPGEX-6P-1
    FragmentC1 DOMAIN, RESIDUES 284-339
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMALE GERM CELL RACGAP, MGCRACGAP, PROTEIN CYK4 HOMOLG, CYK4, HSCYK-4

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)A     
Biological Unit 2 (1x) B    
Biological Unit 3 (1x)  C   
Biological Unit 4 (1x)   D  
Biological Unit 5 (1x)    E 
Biological Unit 6 (1x)     F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric Unit (2, 13)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2ZN12Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2ZN-1Ligand/IonZINC ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2ZN-1Ligand/IonZINC ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2ZN-1Ligand/IonZINC ION
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2ZN-1Ligand/IonZINC ION
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2ZN-1Ligand/IonZINC ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:287 , CYS A:319 , VAL A:321 , PRO A:332 , PRO A:334 , CYS A:335 , ILE A:336 , HOH A:2028 , GLY D:279 , PRO D:280BINDING SITE FOR RESIDUE GOL A1339
02AC2SOFTWARECYS A:300 , CYS A:303 , HIS A:324 , CYS A:327BINDING SITE FOR RESIDUE ZN A1340
03AC3SOFTWAREHIS A:287 , CYS A:316 , CYS A:319 , CYS A:335BINDING SITE FOR RESIDUE ZN A1341
04AC4SOFTWARECYS B:300 , CYS B:303 , HIS B:324 , CYS B:327BINDING SITE FOR RESIDUE ZN B1339
05AC5SOFTWAREHIS B:287 , CYS B:316 , CYS B:319 , CYS B:335BINDING SITE FOR RESIDUE ZN B1340
06AC6SOFTWARECYS C:300 , CYS C:303 , HIS C:324 , CYS C:327BINDING SITE FOR RESIDUE ZN C1339
07AC7SOFTWAREHIS C:287 , CYS C:316 , CYS C:319 , CYS C:335BINDING SITE FOR RESIDUE ZN C1340
08AC8SOFTWARECYS D:300 , CYS D:303 , HIS D:324 , CYS D:327BINDING SITE FOR RESIDUE ZN D1339
09AC9SOFTWAREHIS D:287 , CYS D:316 , CYS D:319 , CYS D:335BINDING SITE FOR RESIDUE ZN D1340
10BC1SOFTWARECYS E:300 , CYS E:303 , HIS E:324 , CYS E:327BINDING SITE FOR RESIDUE ZN E1339
11BC2SOFTWAREHIS E:287 , CYS E:316 , CYS E:319 , CYS E:335BINDING SITE FOR RESIDUE ZN E1340
12BC3SOFTWARECYS F:300 , CYS F:303 , HIS F:324 , CYS F:327BINDING SITE FOR RESIDUE ZN F1339
13BC4SOFTWAREHIS F:287 , CYS F:316 , CYS F:319 , CYS F:335BINDING SITE FOR RESIDUE ZN F1340

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4B6D)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Leu A:333 -Pro A:334
2Gly B:282 -Ser B:283
3Leu B:333 -Pro B:334
4Leu C:333 -Pro C:334
5Leu D:333 -Pro D:334
6Gly E:282 -Ser E:283
7Leu E:333 -Pro E:334
8Leu F:333 -Pro F:334

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4B6D)

(-) PROSITE Motifs  (2, 12)

Asymmetric Unit (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_DAG_PE_2PS50081 Zinc finger phorbol-ester/DAG-type profile.RGAP1_HUMAN286-335
 
 
 
 
 
  6A:286-335
B:286-335
C:286-335
D:286-335
E:286-335
F:286-335
2ZF_DAG_PE_1PS00479 Zinc finger phorbol-ester/DAG-type signature.RGAP1_HUMAN287-335
 
 
 
 
 
  6A:287-335
B:287-335
C:287-335
D:287-335
E:287-335
F:287-335
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_DAG_PE_2PS50081 Zinc finger phorbol-ester/DAG-type profile.RGAP1_HUMAN286-335
 
 
 
 
 
  1A:286-335
-
-
-
-
-
2ZF_DAG_PE_1PS00479 Zinc finger phorbol-ester/DAG-type signature.RGAP1_HUMAN287-335
 
 
 
 
 
  1A:287-335
-
-
-
-
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_DAG_PE_2PS50081 Zinc finger phorbol-ester/DAG-type profile.RGAP1_HUMAN286-335
 
 
 
 
 
  1-
B:286-335
-
-
-
-
2ZF_DAG_PE_1PS00479 Zinc finger phorbol-ester/DAG-type signature.RGAP1_HUMAN287-335
 
 
 
 
 
  1-
B:287-335
-
-
-
-
Biological Unit 3 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_DAG_PE_2PS50081 Zinc finger phorbol-ester/DAG-type profile.RGAP1_HUMAN286-335
 
 
 
 
 
  1-
-
C:286-335
-
-
-
2ZF_DAG_PE_1PS00479 Zinc finger phorbol-ester/DAG-type signature.RGAP1_HUMAN287-335
 
 
 
 
 
  1-
-
C:287-335
-
-
-
Biological Unit 4 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_DAG_PE_2PS50081 Zinc finger phorbol-ester/DAG-type profile.RGAP1_HUMAN286-335
 
 
 
 
 
  1-
-
-
D:286-335
-
-
2ZF_DAG_PE_1PS00479 Zinc finger phorbol-ester/DAG-type signature.RGAP1_HUMAN287-335
 
 
 
 
 
  1-
-
-
D:287-335
-
-
Biological Unit 5 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_DAG_PE_2PS50081 Zinc finger phorbol-ester/DAG-type profile.RGAP1_HUMAN286-335
 
 
 
 
 
  1-
-
-
-
E:286-335
-
2ZF_DAG_PE_1PS00479 Zinc finger phorbol-ester/DAG-type signature.RGAP1_HUMAN287-335
 
 
 
 
 
  1-
-
-
-
E:287-335
-
Biological Unit 6 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_DAG_PE_2PS50081 Zinc finger phorbol-ester/DAG-type profile.RGAP1_HUMAN286-335
 
 
 
 
 
  1-
-
-
-
-
F:286-335
2ZF_DAG_PE_1PS00479 Zinc finger phorbol-ester/DAG-type signature.RGAP1_HUMAN287-335
 
 
 
 
 
  1-
-
-
-
-
F:287-335

(-) Exons   (3, 16)

Asymmetric Unit (3, 16)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1cENST000003123771cENSE00001561968chr12:50419226-5041918146RGAP1_HUMAN-00--
1.4bENST000003123774bENSE00001211806chr12:50410502-5041041489RGAP1_HUMAN1-29290--
1.5ENST000003123775ENSE00001162854chr12:50400419-50400217203RGAP1_HUMAN29-96680--
1.6ENST000003123776ENSE00001114528chr12:50399175-50399039137RGAP1_HUMAN97-142460--
1.7ENST000003123777ENSE00001114502chr12:50398087-5039801870RGAP1_HUMAN142-165240--
1.8ENST000003123778ENSE00001162837chr12:50396083-5039603054RGAP1_HUMAN166-183180--
1.9ENST000003123779ENSE00001162833chr12:50395035-5039495581RGAP1_HUMAN184-210270--
1.10ENST0000031237710ENSE00001162829chr12:50393516-50393399118RGAP1_HUMAN211-250404A:279-281
-
C:279-281
D:279-281
-
F:279-281
3
-
3
3
-
3
1.11ENST0000031237711ENSE00001060419chr12:50393054-50392924131RGAP1_HUMAN250-293446A:282-293
B:282-293
C:282-293
D:282-293
E:282-293
F:282-293
12
12
12
12
12
12
1.12ENST0000031237712ENSE00001162819chr12:50390987-50390823165RGAP1_HUMAN294-348556A:294-338
B:294-338
C:294-338
D:294-338
E:294-338
F:294-338
45
45
45
45
45
45
1.13ENST0000031237713ENSE00001060414chr12:50388292-5038819796RGAP1_HUMAN349-380320--
1.14ENST0000031237714ENSE00001060411chr12:50388112-50387914199RGAP1_HUMAN381-447670--
1.15ENST0000031237715ENSE00001162806chr12:50386438-50386333106RGAP1_HUMAN447-482360--
1.16ENST0000031237716ENSE00001162799chr12:50386160-50386028133RGAP1_HUMAN482-526450--
1.17ENST0000031237717ENSE00001162793chr12:50385916-50385781136RGAP1_HUMAN527-572460--
1.18ENST0000031237718ENSE00001162785chr12:50384575-50384467109RGAP1_HUMAN572-608370--
1.19aENST0000031237719aENSE00001362495chr12:50384126-503829471180RGAP1_HUMAN608-632250--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:60
 aligned with RGAP1_HUMAN | Q9H0H5 from UniProtKB/Swiss-Prot  Length:632

    Alignment length:111
                                   237       247       257       267       277       287       297       307       317       327       337 
          RGAP1_HUMAN   228 GPIEAVSTIETVPYWTRSRRKTGTLQPWNSDSTLNSRQLEPRTETDSVGTPQSNGGMRLHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLPCIPT 338
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..e---------------------------------------------------e......eeeee....ee......ee....eeeee.....eehhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------ZF_DAG_PE_2  PDB: A:286-335 UniProt: 286-335      --- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------ZF_DAG_PE_1  PDB: A:287-335 UniProt: 287-335     --- PROSITE (2)
           Transcript 1 (1) Exon 1.10 [INCOMPLETE] -------------------------------------------Exon 1.12  PDB: A:294-338 UniProt: 294-348    Transcript 1 (1)
           Transcript 1 (2) ----------------------Exon 1.11  PDB: A:282-293 UniProt: 250-293  --------------------------------------------- Transcript 1 (2)
                 4b6d A 279 GPL---------------------------------------------------GSMRLHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLPCIPT 338
                              |      -         -         -         -         -    |  287       297       307       317       327       337 
                              |                                                 282                                                        
                            281                                                                                                            

Chain B from PDB  Type:PROTEIN  Length:57
 aligned with RGAP1_HUMAN | Q9H0H5 from UniProtKB/Swiss-Prot  Length:632

    Alignment length:57
                                   291       301       311       321       331       
          RGAP1_HUMAN   282 GGMRLHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLPCIPT 338
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee....ee......ee....eeeee.....eehhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----ZF_DAG_PE_2  PDB: B:286-335 UniProt: 286-335      --- PROSITE (1)
                PROSITE (2) -----ZF_DAG_PE_1  PDB: B:287-335 UniProt: 287-335     --- PROSITE (2)
           Transcript 1 (1) ------------Exon 1.12  PDB: B:294-338 UniProt: 294-348    Transcript 1 (1)
           Transcript 1 (2) Exon 1.11   --------------------------------------------- Transcript 1 (2)
                 4b6d B 282 GSMRLHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLPCIPT 338
                                   291       301       311       321       331       

Chain C from PDB  Type:PROTEIN  Length:60
 aligned with RGAP1_HUMAN | Q9H0H5 from UniProtKB/Swiss-Prot  Length:632

    Alignment length:111
                                   237       247       257       267       277       287       297       307       317       327       337 
          RGAP1_HUMAN   228 GPIEAVSTIETVPYWTRSRRKTGTLQPWNSDSTLNSRQLEPRTETDSVGTPQSNGGMRLHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLPCIPT 338
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...---------------------------------------------------.......eeeee....ee......ee....eeeee.....eehhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------ZF_DAG_PE_2  PDB: C:286-335 UniProt: 286-335      --- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------ZF_DAG_PE_1  PDB: C:287-335 UniProt: 287-335     --- PROSITE (2)
           Transcript 1 (1) Exon 1.10 [INCOMPLETE] -------------------------------------------Exon 1.12  PDB: C:294-338 UniProt: 294-348    Transcript 1 (1)
           Transcript 1 (2) ----------------------Exon 1.11  PDB: C:282-293 UniProt: 250-293  --------------------------------------------- Transcript 1 (2)
                 4b6d C 279 GPL---------------------------------------------------GSMRLHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLPCIPT 338
                              |      -         -         -         -         -    |  287       297       307       317       327       337 
                            281                                                 282                                                        

Chain D from PDB  Type:PROTEIN  Length:60
 aligned with RGAP1_HUMAN | Q9H0H5 from UniProtKB/Swiss-Prot  Length:632

    Alignment length:111
                                   237       247       257       267       277       287       297       307       317       327       337 
          RGAP1_HUMAN   228 GPIEAVSTIETVPYWTRSRRKTGTLQPWNSDSTLNSRQLEPRTETDSVGTPQSNGGMRLHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLPCIPT 338
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...---------------------------------------------------.......eeeee....ee......ee....eeeee.....eehhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------ZF_DAG_PE_2  PDB: D:286-335 UniProt: 286-335      --- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------ZF_DAG_PE_1  PDB: D:287-335 UniProt: 287-335     --- PROSITE (2)
           Transcript 1 (1) Exon 1.10 [INCOMPLETE] -------------------------------------------Exon 1.12  PDB: D:294-338 UniProt: 294-348    Transcript 1 (1)
           Transcript 1 (2) ----------------------Exon 1.11  PDB: D:282-293 UniProt: 250-293  --------------------------------------------- Transcript 1 (2)
                 4b6d D 279 GPL---------------------------------------------------GSMRLHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLPCIPT 338
                              |      -         -         -         -         -    |  287       297       307       317       327       337 
                            281                                                 282                                                        

Chain E from PDB  Type:PROTEIN  Length:57
 aligned with RGAP1_HUMAN | Q9H0H5 from UniProtKB/Swiss-Prot  Length:632

    Alignment length:57
                                   291       301       311       321       331       
          RGAP1_HUMAN   282 GGMRLHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLPCIPT 338
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee....ee......ee....eeeee.....eehhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----ZF_DAG_PE_2  PDB: E:286-335 UniProt: 286-335      --- PROSITE (1)
                PROSITE (2) -----ZF_DAG_PE_1  PDB: E:287-335 UniProt: 287-335     --- PROSITE (2)
           Transcript 1 (1) ------------Exon 1.12  PDB: E:294-338 UniProt: 294-348    Transcript 1 (1)
           Transcript 1 (2) Exon 1.11   --------------------------------------------- Transcript 1 (2)
                 4b6d E 282 GSMRLHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLPCIPT 338
                                   291       301       311       321       331       

Chain F from PDB  Type:PROTEIN  Length:60
 aligned with RGAP1_HUMAN | Q9H0H5 from UniProtKB/Swiss-Prot  Length:632

    Alignment length:111
                                   237       247       257       267       277       287       297       307       317       327       337 
          RGAP1_HUMAN   228 GPIEAVSTIETVPYWTRSRRKTGTLQPWNSDSTLNSRQLEPRTETDSVGTPQSNGGMRLHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLPCIPT 338
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...---------------------------------------------------..ee...eeeee....ee......ee....eeeee.....eehhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------ZF_DAG_PE_2  PDB: F:286-335 UniProt: 286-335      --- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------ZF_DAG_PE_1  PDB: F:287-335 UniProt: 287-335     --- PROSITE (2)
           Transcript 1 (1) Exon 1.10 [INCOMPLETE] -------------------------------------------Exon 1.12  PDB: F:294-338 UniProt: 294-348    Transcript 1 (1)
           Transcript 1 (2) ----------------------Exon 1.11  PDB: F:282-293 UniProt: 250-293  --------------------------------------------- Transcript 1 (2)
                 4b6d F 279 GPL---------------------------------------------------GSMRLHDFVSKTVIKPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRDRCPLPCIPT 338
                              |      -         -         -         -         -    |  287       297       307       317       327       337 
                            281                                                 282                                                        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4B6D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4B6D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4B6D)

(-) Gene Ontology  (50, 50)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (RGAP1_HUMAN | Q9H0H5)
molecular function
    GO:0005096    GTPase activator activity    Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP.
    GO:0043014    alpha-tubulin binding    Interacting selectively and non-covalently with the microtubule constituent protein alpha-tubulin.
    GO:0048487    beta-tubulin binding    Interacting selectively and non-covalently with the microtubule constituent protein beta-tubulin.
    GO:0043015    gamma-tubulin binding    Interacting selectively and non-covalently with the microtubule constituent protein gamma-tubulin.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008017    microtubule binding    Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers.
    GO:0005547    phosphatidylinositol-3,4,5-trisphosphate binding    Interacting selectively and non-covalently with phosphatidylinositol-3,4,5-trisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3', 4' and 5' positions.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
biological process
    GO:0000915    actomyosin contractile ring assembly    The process of assembly of a ring composed of actin, myosin, and associated proteins that will function in cytokinesis.
    GO:0019886    antigen processing and presentation of exogenous peptide antigen via MHC class II    The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein.
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0009790    embryo development    The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0007018    microtubule-based movement    A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components. Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules.
    GO:0000281    mitotic cytokinesis    A cell cycle process that results in the division of the cytoplasm of a cell after mitosis, resulting in the separation of the original cell into two daughter cells.
    GO:0051256    mitotic spindle midzone assembly    The cell cycle process in which the aggregation, arrangement and bonding together of a set of components forms the spindle midzone.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0007405    neuroblast proliferation    The expansion of a neuroblast population by cell division. A neuroblast is any cell that will divide and give rise to a neuron.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0032467    positive regulation of cytokinesis    Any process that activates or increases the frequency, rate or extent of the division of the cytoplasm of a cell, and its separation into two daughter cells.
    GO:0051988    regulation of attachment of spindle microtubules to kinetochore    Any process that modulates the frequency, rate or extent of the attachment of spindle microtubules to the kinetochore.
    GO:0051056    regulation of small GTPase mediated signal transduction    Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction.
    GO:0006890    retrograde vesicle-mediated transport, Golgi to ER    The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0007283    spermatogenesis    The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
    GO:0008272    sulfate transport    The directed movement of sulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0001669    acrosomal vesicle    A structure in the head of a spermatozoon that contains acid hydrolases, and is concerned with the breakdown of the outer membrane of the ovum during fertilization. It lies just beneath the plasma membrane and is derived from the lysosome.
    GO:0097149    centralspindlin complex    A heterotetrameric protein complex playing a key role in the formation of the central spindle in mitosis. Made up of two molecules each of a mitotic kinesin (ZEN-4 in Caenorhabditis elegans or MKLP1 in mammals) and of two molecules each of a GTPase activating protein (GAP) factor (CYK-4 in Caenorhabditis elegans or MgcRacGAP in mammals).
    GO:0032154    cleavage furrow    The cleavage furrow is a plasma membrane invagination at the cell division site. The cleavage furrow begins as a shallow groove and eventually deepens to divide the cytoplasm.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0031410    cytoplasmic vesicle    A vesicle found in the cytoplasm of a cell.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0031234    extrinsic component of cytoplasmic side of plasma membrane    The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to its cytoplasmic surface, but not integrated into the hydrophobic region.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005874    microtubule    Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
    GO:0030496    midbody    A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis.
    GO:0072686    mitotic spindle    A spindle that forms as part of mitosis. Mitotic and meiotic spindles contain distinctive complements of proteins associated with microtubules.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0005819    spindle    The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart.
    GO:0051233    spindle midzone    The area in the center of the spindle where the spindle microtubules from opposite poles overlap.

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        RGAP1_HUMAN | Q9H0H52ovj 3w6r 3wpq 3wps 5c2j 5c2k

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