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(-) Description

Title :  HUMAN TRKA IN COMPLEX WITH THE INHIBITOR AZ-23
 
Authors :  T. Wang, M. L. Lamb, M. H. Block, A. M. Davies, Y. Han, E. Hoffmann, S. Ioan J. A. Josey, Z. Liu, P. D. Lyne, T. Macintyre, P. J. Mohr, C. A. Omer, T. Sj K. Thress, B. Wang, H. Wang, D. Yu, H. Zhang
Date :  28 Mar 12  (Deposition) - 15 Aug 12  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (4x)
Keywords :  Transferase, Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Wang, M. L. Lamb, M. H. Block, A. M. Davies, Y. Han, E. Hoffmann, S. Ioannidis, J. A. Josey, Z. Liu, P. D. Lyne, T. Macintyre, P. J. Mohr, C. A. Omer, T. Sjogren, K. Thress, B. Wang, H. Wang, D. Yu, H. Zhang
Discovery Of Disubstituted Imidazo[4, 5-B]Pyridines And Purines As Potent Trka Inhibitors
Acs Med. Chem. Lett. V. 3 705 2012
PubMed-ID: 24900538  |  Reference-DOI: 10.1021/ML300074J

(-) Compounds

Molecule 1 - HIGH AFFINITY NERVE GROWTH FACTOR RECEPTOR
    ChainsA, B, C
    EC Number2.7.10.1
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Cell LineSF9
    Expression System CommonFALL ARMYWORM
    Expression System PlasmidPFASTBAC HTB
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    FragmentKINASE DOMAIN, RESIDUES 473-796
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymNEUROTROPHIC TYROSINE KINASE RECEPTOR TYPE 1, TRK1-TRANSFORMING TYROSINE KINASE PROTEIN, TROPOMYOSIN-RELATED KINASE A, TYROSINE KINASE RECEPTOR, TYROSINE KINASE RECEPTOR A, TRK-A, GP140TRK, P140-TRKA, TRKA

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit ABC
Biological Unit 1 (4x)ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric Unit (2, 9)
No.NameCountTypeFull Name
1V4Z3Ligand/Ion5-CHLORANYL-N2-[(1S)-1-(5-FLUORANYLPYRIDIN-2-YL)ETHYL]-N4-(3-PROPAN-2-YLOXY-1H-PYRAZOL-5-YL)PYRIMIDINE-2,4-DIAMINE
2ZN6Ligand/IonZINC ION
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1V4Z12Ligand/Ion5-CHLORANYL-N2-[(1S)-1-(5-FLUORANYLPYRIDIN-2-YL)ETHYL]-N4-(3-PROPAN-2-YLOXY-1H-PYRAZOL-5-YL)PYRIMIDINE-2,4-DIAMINE
2ZN-1Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:516 , VAL A:524 , ALA A:542 , PHE A:589 , GLU A:590 , TYR A:591 , MET A:592 , ARG A:593 , GLY A:595 , ASP A:596 , ARG A:654 , ASN A:655 , CYS A:656 , LEU A:657 , GLY A:667 , ASP A:668 , HOH A:2036BINDING SITE FOR RESIDUE V4Z A 900
2AC2SOFTWARELEU B:516 , VAL B:524 , ALA B:542 , PHE B:589 , GLU B:590 , TYR B:591 , MET B:592 , ARG B:593 , GLY B:595 , ARG B:654 , ASN B:655 , LEU B:657 , GLY B:667BINDING SITE FOR RESIDUE V4Z B 900
3AC3SOFTWARELEU C:516 , VAL C:524 , ALA C:542 , GLU C:590 , TYR C:591 , MET C:592 , GLY C:595 , ASP C:596 , ARG C:654 , ASN C:655 , CYS C:656 , LEU C:657 , GLY C:667 , ASP C:668BINDING SITE FOR RESIDUE V4Z C 900
4AC4SOFTWAREHIS A:504 , CYS A:579 , GLU A:581 , CYS C:501BINDING SITE FOR RESIDUE ZN A1790
5AC5SOFTWAREGLU A:515 , GLU A:518 , LYS A:523 , HIS C:645BINDING SITE FOR RESIDUE ZN A1791
6AC6SOFTWARECYS A:501 , HIS B:504 , CYS B:579 , GLU B:581BINDING SITE FOR RESIDUE ZN B1792
7AC7SOFTWAREHIS A:645 , GLU B:515 , GLU B:518 , LYS B:523BINDING SITE FOR RESIDUE ZN B1793
8AC8SOFTWARECYS B:501 , HIS C:504 , CYS C:579 , GLU C:581BINDING SITE FOR RESIDUE ZN C1790
9AC9SOFTWAREHIS B:645 , GLU C:515 , GLU C:518 , LYS C:523BINDING SITE FOR RESIDUE ZN C1791

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4AOJ)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Arg A:583 -Pro A:584
2Arg B:583 -Pro B:584
3Arg C:583 -Pro C:584

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (21, 61)

Asymmetric Unit (21, 61)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_077472G517ENTRK1_HUMANDisease (CIPA)606231467A/B/CG517E
02UniProtVAR_077473G522ENTRK1_HUMANDisease (CIPA)  ---A/B/CG522E
03UniProtVAR_009626G522RNTRK1_HUMANDisease (CIPA)  ---A/B/CG522R
04UniProtVAR_041468M566TNTRK1_HUMANPolymorphism55892037A/B/CM566T
05UniProtVAR_077474I572SNTRK1_HUMANDisease (CIPA)  ---A/B/CI572S
06UniProtVAR_004103G577RNTRK1_HUMANDisease (CIPA)121964866A/B/CG577R
07UniProtVAR_009627M587VNTRK1_HUMANDisease (CIPA)121964870A/B/CM587V
08UniProtVAR_009628H604YNTRK1_HUMANPolymorphism6336A/B/CH604Y
09UniProtVAR_009630R649WNTRK1_HUMANDisease (CIPA)369353892A/B/CR649W
10UniProtVAR_009631R654CNTRK1_HUMANDisease (CIPA)764992664A/B/CR654C
11UniProtVAR_077475L657PNTRK1_HUMANDisease (CIPA)  ---A/B/CL657P
12UniProtVAR_009633P695LNTRK1_HUMANDisease (CIPA)121964868A/B/CP695L
13UniProtVAR_077476I699TNTRK1_HUMANDisease (CIPA)  ---A/B/CI699T
14UniProtVAR_009634G714SNTRK1_HUMANDisease (CIPA)770727871A/B/CG714S
15UniProtVAR_077477L717RNTRK1_HUMANDisease (CIPA)  ---A/B/CL717R
16UniProtVAR_077478C752SNTRK1_HUMANUnclassified (CIPA)  ---A/B/CC752S
17UniProtVAR_077479C763SNTRK1_HUMANDisease (CIPA)  ---A/B/CC763S
18UniProtVAR_077480R771CNTRK1_HUMANDisease (CIPA)  ---A/B/CR771C
19UniProtVAR_009635R780PNTRK1_HUMANDisease (CIPA)35669708A/B/CR780P
20UniProtVAR_009636R780QNTRK1_HUMANPolymorphism35669708A/B/CR780Q
21UniProtVAR_041469V790INTRK1_HUMANPolymorphism55948542BV790I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (21, 244)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_077472G517ENTRK1_HUMANDisease (CIPA)606231467A/B/CG517E
02UniProtVAR_077473G522ENTRK1_HUMANDisease (CIPA)  ---A/B/CG522E
03UniProtVAR_009626G522RNTRK1_HUMANDisease (CIPA)  ---A/B/CG522R
04UniProtVAR_041468M566TNTRK1_HUMANPolymorphism55892037A/B/CM566T
05UniProtVAR_077474I572SNTRK1_HUMANDisease (CIPA)  ---A/B/CI572S
06UniProtVAR_004103G577RNTRK1_HUMANDisease (CIPA)121964866A/B/CG577R
07UniProtVAR_009627M587VNTRK1_HUMANDisease (CIPA)121964870A/B/CM587V
08UniProtVAR_009628H604YNTRK1_HUMANPolymorphism6336A/B/CH604Y
09UniProtVAR_009630R649WNTRK1_HUMANDisease (CIPA)369353892A/B/CR649W
10UniProtVAR_009631R654CNTRK1_HUMANDisease (CIPA)764992664A/B/CR654C
11UniProtVAR_077475L657PNTRK1_HUMANDisease (CIPA)  ---A/B/CL657P
12UniProtVAR_009633P695LNTRK1_HUMANDisease (CIPA)121964868A/B/CP695L
13UniProtVAR_077476I699TNTRK1_HUMANDisease (CIPA)  ---A/B/CI699T
14UniProtVAR_009634G714SNTRK1_HUMANDisease (CIPA)770727871A/B/CG714S
15UniProtVAR_077477L717RNTRK1_HUMANDisease (CIPA)  ---A/B/CL717R
16UniProtVAR_077478C752SNTRK1_HUMANUnclassified (CIPA)  ---A/B/CC752S
17UniProtVAR_077479C763SNTRK1_HUMANDisease (CIPA)  ---A/B/CC763S
18UniProtVAR_077480R771CNTRK1_HUMANDisease (CIPA)  ---A/B/CR771C
19UniProtVAR_009635R780PNTRK1_HUMANDisease (CIPA)35669708A/B/CR780P
20UniProtVAR_009636R780QNTRK1_HUMANPolymorphism35669708A/B/CR780Q
21UniProtVAR_041469V790INTRK1_HUMANPolymorphism55948542BV790I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 6)

Asymmetric Unit (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.NTRK1_HUMAN516-544
 
 
  3A:516-544
B:516-544
C:516-544
2PROTEIN_KINASE_TYRPS00109 Tyrosine protein kinases specific active-site signature.NTRK1_HUMAN646-658
 
 
  3A:646-658
B:646-658
C:646-658
Biological Unit 1 (2, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEIN_KINASE_ATPPS00107 Protein kinases ATP-binding region signature.NTRK1_HUMAN516-544
 
 
  12A:516-544
B:516-544
C:516-544
2PROTEIN_KINASE_TYRPS00109 Tyrosine protein kinases specific active-site signature.NTRK1_HUMAN646-658
 
 
  12A:646-658
B:646-658
C:646-658

(-) Exons   (0, 0)

(no "Exon" information available for 4AOJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:260
 aligned with NTRK1_HUMAN | P04629 from UniProtKB/Swiss-Prot  Length:796

    Alignment length:290
                                   509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789
          NTRK1_HUMAN   500 ACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPP 789
               SCOP domains d4aoja_ A: automated matches                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhh.eeeeeeeee...eeeeeeee.....---.eeeeeeee...hhhhhhhhhhhhhhhh.........eeeee.....eeeeee.....hhhhhhhh....-----------....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeee...eeee....----------------...hhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh.........hhhhhhhhhhhh........hhhhhhhhhhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) -----------------E----E-------------------------------------------T-----S----R---------V----------------Y--------------------------------------------W----C--P-------------------------------------L---T--------------S--R----------------------------------S----------S-------C--------P--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------R-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q--------- SAPs(SNPs) (2)
                    PROSITE ----------------PROTEIN_KINASE_ATP           -----------------------------------------------------------------------------------------------------PROTEIN_KINAS----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aoj A 500 ACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLP---KMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPD-----------PGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFG----------------TMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPP 789
                                   509       519       529    |  539       549       559       569       579       589       599       | -       619       629       639       649       659       669|        -       689       699       709       719       729       739       749       759       769       779       789
                                                            534 538                                                                  607         619                                                670              687                                                                                                      

Chain B from PDB  Type:PROTEIN  Length:258
 aligned with NTRK1_HUMAN | P04629 from UniProtKB/Swiss-Prot  Length:796

    Alignment length:292
                                   509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789  
          NTRK1_HUMAN   500 ACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPPVY 791
               SCOP domains d4aojb_ B: automated matches                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhh.eeeeeeeee...eeeeeeee.....---.eeeeeeee....hhhhhhhhhhhhhhh.........eeeee.....eeeeee.....hhhhhhhhh...------------...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeee...eeee...-------------------.hhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...........hhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh.... Sec.struct. author
             SAPs(SNPs) (1) -----------------E----E-------------------------------------------T-----S----R---------V----------------Y--------------------------------------------W----C--P-------------------------------------L---T--------------S--R----------------------------------S----------S-------C--------P---------I- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------R-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q----------- SAPs(SNPs) (2)
                    PROSITE ----------------PROTEIN_KINASE_ATP           -----------------------------------------------------------------------------------------------------PROTEIN_KINAS------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aoj B 500 ACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLP---KMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPD------------GPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDF-------------------LPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPPVY 791
                                   509       519       529    |  539       549       559       569       579       589       599       | -         -|      629       639       649       659       669         -       689       699       709       719       729       739       749       759       769       779       789  
                                                            534 538                                                                  607          620                                              669                 689                                                                                                      

Chain C from PDB  Type:PROTEIN  Length:261
 aligned with NTRK1_HUMAN | P04629 from UniProtKB/Swiss-Prot  Length:796

    Alignment length:290
                                   509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789
          NTRK1_HUMAN   500 ACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPP 789
               SCOP domains d4aojc_ C: automated matches                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhh.eeeeeeeee...eeeeeeeee....-..eeeeeeeee...hhhhhhhhhhhhhhhh.........eeeee.....eeeeee....eehhhhhhhh...------------...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeee...eeee.....----------------..hhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh.. Sec.struct. author
             SAPs(SNPs) (1) -----------------E----E-------------------------------------------T-----S----R---------V----------------Y--------------------------------------------W----C--P-------------------------------------L---T--------------S--R----------------------------------S----------S-------C--------P--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------R-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q--------- SAPs(SNPs) (2)
                    PROSITE ----------------PROTEIN_KINASE_ATP           -----------------------------------------------------------------------------------------------------PROTEIN_KINAS----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aoj C 500 ACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLP-QDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPD------------GPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGM----------------MLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPP 789
                                   509       519       529    | |539       549       559       569       579       589       599       | -         -|      629       639       649       659       669 |       -       689       699       709       719       729       739       749       759       769       779       789
                                                            534 |                                                                    607          620                                                671              688                                                                                                     
                                                              536                                                                                                                                                                                                                                                             

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4AOJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4AOJ)

(-) Gene Ontology  (88, 88)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (NTRK1_HUMAN | P04629)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005004    GPI-linked ephrin receptor activity    Combining with a GPI-anchored ephrin to initiate a change in cell activity.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0019900    kinase binding    Interacting selectively and non-covalently with a kinase, any enzyme that catalyzes the transfer of a phosphate group.
    GO:0048406    nerve growth factor binding    Interacting selectively and non-covalently with nerve growth factor (NGF).
    GO:0010465    nerve growth factor receptor activity    Combining with nerve growth factor (NGF), to prevent apoptosis in neurons and promote nerve growth, or to initiate a change in cell activity.
    GO:0043121    neurotrophin binding    Interacting selectively and non-covalently with a neurotrophin, any of a family of growth factors that prevent apoptosis in neurons and promote nerve growth.
    GO:0005166    neurotrophin p75 receptor binding    Interacting selectively and non-covalently with the neurotrophin p75 receptor.
    GO:0005030    neurotrophin receptor activity    Combining with a neurotrophin, any of a family of growth factors that prevent apoptosis in neurons and promote nerve growth, and transmitting the signal to initiate a change in cell activity.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004713    protein tyrosine kinase activity    Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0004714    transmembrane receptor protein tyrosine kinase activity    Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate.
biological process
    GO:0030183    B cell differentiation    The process in which a precursor cell type acquires the specialized features of a B cell. A B cell is a lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity.
    GO:0060009    Sertoli cell development    The process whose specific outcome is the progression of a Sertoli cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a Sertoli cell fate.
    GO:0000186    activation of MAPKK activity    The initiation of the activity of the inactive enzyme MAP kinase kinase (MAPKK).
    GO:0007568    aging    A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
    GO:0007411    axon guidance    The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues.
    GO:0060385    axonogenesis involved in innervation    The neurite development process that generates a long process of a neuron, as it invades a target tissue.
    GO:0061368    behavioral response to formalin induced pain    Any process that results in a change in the behaviour of an organism as a result of a formalin pain stimulus.
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0071363    cellular response to growth factor stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus.
    GO:1990090    cellular response to nerve growth factor stimulus    A process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nerve growth factor stimulus.
    GO:0071316    cellular response to nicotine    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus.
    GO:0007623    circadian rhythm    Any biological process in an organism that recurs with a regularity of approximately 24 hours.
    GO:0050966    detection of mechanical stimulus involved in sensory perception of pain    The series of events involved in the perception of pain in which a mechanical stimulus is received and converted into a molecular signal.
    GO:0050965    detection of temperature stimulus involved in sensory perception of pain    The series of events involved in the perception of pain in which a temperature stimulus is received and converted into a molecular signal.
    GO:0048013    ephrin receptor signaling pathway    The series of molecular signals generated as a consequence of an ephrin receptor binding to an ephrin.
    GO:0060384    innervation    The process in which a nerve invades a tissue and makes functional synaptic connection within the tissue.
    GO:0007611    learning or memory    The acquisition and processing of information and/or the storage and retrieval of this information over time.
    GO:0042490    mechanoreceptor differentiation    The process in which a relatively unspecialized cell acquires specialized features of a mechanoreceptor, a cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system.
    GO:0007018    microtubule-based movement    A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components. Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0008285    negative regulation of cell proliferation    Any process that stops, prevents or reduces the rate or extent of cell proliferation.
    GO:0043524    negative regulation of neuron apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process in neurons.
    GO:1901215    negative regulation of neuron death    Any process that stops, prevents or reduces the frequency, rate or extent of neuron death.
    GO:0038180    nerve growth factor signaling pathway    A series of molecular signals initiated by the binding of nerve growth factor (NGF) to a receptor on the surface of the target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0007399    nervous system development    The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
    GO:0048011    neurotrophin TRK receptor signaling pathway    A series of molecular signals initiated by the binding of a neurotrophin to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0021553    olfactory nerve development    The process whose specific outcome is the progression of the olfactory nerve over time, from its formation to the mature structure. The olfactory nerve is a collection of sensory nerve rootlets that extend down from the olfactory bulb to the olfactory mucosa of the upper parts of the nasal cavity. This nerve conducts odor information to the brainstem.
    GO:0018108    peptidyl-tyrosine phosphorylation    The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine.
    GO:0048015    phosphatidylinositol-mediated signaling    A series of molecular signals in which a cell uses a phosphatidylinositol-mediated signaling to convert a signal into a response. Phosphatidylinositols include phosphatidylinositol (PtdIns) and its phosphorylated derivatives.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0070374    positive regulation of ERK1 and ERK2 cascade    Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade.
    GO:0043547    positive regulation of GTPase activity    Any process that activates or increases the activity of a GTPase.
    GO:0051092    positive regulation of NF-kappaB transcription factor activity    Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB.
    GO:0046579    positive regulation of Ras protein signal transduction    Any process that activates or increases the frequency, rate or extent of Ras protein signal transduction.
    GO:0045766    positive regulation of angiogenesis    Any process that activates or increases angiogenesis.
    GO:0010976    positive regulation of neuron projection development    Any process that increases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
    GO:0043068    positive regulation of programmed cell death    Any process that activates or increases the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes.
    GO:0001934    positive regulation of protein phosphorylation    Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein.
    GO:0051965    positive regulation of synapse assembly    Any process that activates, maintains or increases the frequency, rate or extent of synapse assembly, the aggregation, arrangement and bonding together of a set of components to form a synapse.
    GO:0051968    positive regulation of synaptic transmission, glutamatergic    Any process that activates, maintains or increases the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate.
    GO:0010623    programmed cell death involved in cell development    The activation of endogenous cellular processes that result in the death of a cell as part of its development.
    GO:0046777    protein autophosphorylation    The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation).
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0014823    response to activity    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an activity stimulus.
    GO:0048678    response to axon injury    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an axon injury stimulus.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0051602    response to electrical stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus.
    GO:0045471    response to ethanol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
    GO:0051599    response to hydrostatic pressure    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrostatic pressure stimulus. Hydrostatic pressure is the force acting on an object in a system where the fluid is at rest (as opposed to moving). The weight of the fluid above the object creates pressure on it.
    GO:0035094    response to nicotine    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus.
    GO:0031667    response to nutrient levels    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
    GO:0009314    response to radiation    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation.
    GO:0019233    sensory perception of pain    The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances. This is a neurological process.
    GO:0048485    sympathetic nervous system development    The process whose specific outcome is the progression of the sympathetic nervous system over time, from its formation to the mature structure. The sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter.
    GO:0007169    transmembrane receptor protein tyrosine kinase signaling pathway    A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
    GO:0030424    axon    The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0031410    cytoplasmic vesicle    A vesicle found in the cytoplasm of a cell.
    GO:0030425    dendrite    A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
    GO:0005769    early endosome    A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
    GO:0031901    early endosome membrane    The lipid bilayer surrounding an early endosome.
    GO:0005768    endosome    A vacuole to which materials ingested by endocytosis are delivered.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005770    late endosome    A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.
    GO:0031902    late endosome membrane    The lipid bilayer surrounding a late endosome.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0043025    neuronal cell body    The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
    GO:0043235    receptor complex    Any protein complex that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        NTRK1_HUMAN | P046291he7 1shc 1wwa 1www 2ifg 2n90 4crp 4f0i 4gt5 4pmm 4pmp 4pms 4pmt 4yne 4yps 5h3q 5jfs 5jfv 5jfw 5jfx 5kmi 5kmj 5kmk 5kml 5kmm 5kmn 5kmo

(-) Related Entries Specified in the PDB File

1he7 HUMAN NERVE GROWTH FACTOR RECEPTOR TRKA
1shc SHC PTB DOMAIN COMPLEXED WITH A TRKA RECEPTOR PHOSPHOPEPTIDE, NMR, MINIMIZED AVERAGE STRUCTURE
1wwa NGF BINDING DOMAIN OF HUMAN TRKA RECEPTOR
1www NGF IN COMPLEX WITH DOMAIN 5 OF THE TRKA RECEPTOR