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(-) Description

Title :  STRUCTURE OF PAXX
 
Authors :  T. Ochi, T. L. Blundell
Date :  09 Apr 14  (Deposition) - 21 Jan 15  (Release) - 21 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dna Repair, Scaffold, Nuclear Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Ochi, A. N. Blackford, J. Coates, S. Jhujh, S. Mehmood, N. Tamura, J. Travers, Q. Wu, V. M. Draviam, C. Robinson, T. L. Blundell, S. P. Jackson
Paxx, A Paralog Of Xrcc4 And Xlf, Interacts With Ku To Promote Dna Double-Strand Break Repair
Science V. 347 185 2015
PubMed: search  |  Reference-DOI: 10.1126/SCIENCE.1261971

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN C9ORF142
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHAT4
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN, UNP RESIDUES 1-166
    Gene: C9ORF142
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PAXX

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3WTD)

(-) Sites  (0, 0)

(no "Site" information available for 3WTD)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WTD)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Leu A:11 -Pro A:12
2Leu B:11 -Pro B:12

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WTD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WTD)

(-) Exons   (0, 0)

(no "Exon" information available for 3WTD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee........eeeeee....eeeee....eee...hhhhhhhhhhhhh...hhhhhhhhhhhh.eeeeee..eeeeee......eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wtd A   5 SPPLCTLPPGPEPPRFVCYCEGEGFNLYVTDAAELWSTCFTPDSLAALKARFGLEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPRLRALTLGLAKRVWSLERRLAAA 142
                                    14        24  ||    42        52        62   ||   75        85        95       105       115       125       135       
                                                 27|                            66|                                                                        
                                                  36                             70                                                                        


Chain B from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee........eeeeee............eeeee....eee...hhhhhhhhhhhh.......hhhhhhhhhhhh.eeeee...eeeeee......eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wtd B   5 SPPLCTLPPGPEPPRFVCYCEGEESGEGDRGGFNLYVTDAAELWSTCFTPDSLAALKARFGLSAAEDITPRFRAACEQQAVALTLQEDRASLTLSGGPSALAFDLSKVPGPEAAPRLRALTLGLAKRVWSLERRLAAAEET 145
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WTD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WTD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WTD)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
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  Cis Peptide Bonds
    Leu A:11 - Pro A:12   [ RasMol ]  
    Leu B:11 - Pro B:12   [ RasMol ]  
 

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  3wtd
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  PAXX_HUMAN | Q9BUH6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAXX_HUMAN | Q9BUH6: 3wtf 4wja

(-) Related Entries Specified in the PDB File

3wtf