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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BETA-N-ACETYLGLUCOSAMINIDASE FROM THERMOTOGA MARITIMA
 
Authors :  S. Mine, Y. Kado, M. Watanabe, T. Inoue, K. Ishikawa
Date :  20 Dec 13  (Deposition) - 24 Dec 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.43
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Tim Barrel, Glycosidase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Mine, Y. Kado, M. Watanabe, Y. Fukuda, Y. Abe, T. Ueda, Y. Kawarabayasi, T. Inoue, K. Ishikawa
The Structure Of Hyperthermophilic Beta-N-Acetylglucosaminidase Reveals A Novel Dimer Architecture Associated With The Active Site.
Febs J. V. 281 5092 2014
PubMed-ID: 25227262  |  Reference-DOI: 10.1111/FEBS.13049

(-) Compounds

Molecule 1 - BETA-N-ACETYLGLUCOSAMINIDASE
    Chains: A, B
    EC Number: 3.2.1.52
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NAGA, TM_0809
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 243274
    Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099
    Synonym: HYDROLASE, PUTATIVE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3WO8)

(-) Sites  (0, 0)

(no "Site" information available for 3WO8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WO8)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Ala A:113 -Pro A:114
2Lys A:160 -His A:161
3Phe A:162 -Pro A:163
4Ala B:113 -Pro B:114
5Lys B:160 -His B:161
6Phe B:162 -Pro B:163

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WO8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WO8)

(-) Exons   (0, 0)

(no "Exon" information available for 3WO8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:447
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh.eeeee...hhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhhhh..eee..................hhhhhh..hhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhh...eeeee...........ee..hhhhhhhh.hhhhhhhhhhh...eeee...ee......hhhhhhhhhh............ee.....hhhhhh..hhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.eee.........eeeeeee.........hhhhhhhhhhhhhhh..eeeeeeee.............eeeee....hhhhhhhhhh.....eeeee..hhhhhhhhh...eee....hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wo8 A   4 DLGKLFFCGFNDFNEEVKEIIRKYRPTGILIYPGVLSKEYLLMDFMSFLSKEGDFLISSDHEGGQLEVLKYVPSSPGNLAFGKNSPDVTYRYSRVAGKIMEIVGLNMVFAPVLDLLSDIRSYGSDPKIVAEHGARACEGYLEGGVIPCIKHFPGHGKARETLPVVDAPFEKLWEEDLLPFRKVLEREKKVTVMTAHVRYSSIDSLPATLSEKIITDVLREKIGFDGLVISDAMEMSAVSNNFSVEEIVSLFLNAGGNMILLGDYRNLPVYYETLVKLLEDGKVQKDKVERSIRTVEKYLAFAKKNSGVGFLADVSMKAVEFLGFEKIDHTSEVTLLVPSSENLSQADTTGGDYDQIPEIVSRFFEVENVVRYTVEDGPEFVEGDLIFDFVADIPNEKALKAHLSLPAEKTVYFVLRNPFDVRYFEGRKIVVTRSTKPISIYKSLEHF 461
                                    13        23        33        43        53        63        73        83        93       103       113      |130       140       150       160       170|      184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       
                                                                                                                                              120|                                       170|                                                                                                                                                                                                                                                                                              
                                                                                                                                               128                                        175                                                                                                                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:448
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh.eeeee...hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhh..eee..................hhhhhhh.hhhhhhhhhhhhhhhhhhhh..ee................hhhhhhhhhhhhhhhhhhhh.eeeeeee...........ee..hhhhhhhh.hhhhhhhhhhh...eeee...ee......hhhhhhhhhh............eeeee..hhhhhh..hhhhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh.eee.........eeeeeee.........hhhhhhhhhhhhhh....eeeeeee.............eeeee....hhhhhhhhhhh....eeeee..hhhhhhhhh..eeee....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3wo8 B   4 DLGKLFFCGFNDFNEEVKEIIRKYRPTGILIYPGVLSKEYLLMDFMSFLSKEGDFLISSDHEGGQLEVLKYVPSSPGNLAFGKNSPDVTYRYSRVAGKIMEIVGLNMVFAPVLDLLSDIRSYGSDPKIVAEHGARACEGYLEGGVIPCIKHFPGHGKARETLPVVDAPFEKLWEEDLLPFRKVLEREKKVTVMTAHVRYSSIDSLPATLSEKIITDVLREKIGFDGLVISDAMEMSAVSNNFSVEEIVSLFLNAGGNMILLGDYRNLPVYYETLVKLLEDGKVQKDKVERSIRTVEKYLAFAKKNSGVGFLADVSMKAVEFLGFEKIDHTSEVTLLVPSSENLSQADTTGGDYDQIPEIVSRFFEVENVVRYTVEDGPEFVEGDLIFDFVADIPNEKALKAHLSLPAEKTVYFVLRNPFDVRYFEGRKIVVTRSTKPISIYKSLEHFL 462
                                    13        23        33        43        53        63        73        83        93       103       113      |130       140       150       160       170|      184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454        
                                                                                                                                              120|                                       170|                                                                                                                                                                                                                                                                                               
                                                                                                                                               128                                        175
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WO8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WO8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WO8)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
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  Cis Peptide Bonds
    Ala A:113 - Pro A:114   [ RasMol ]  
    Ala B:113 - Pro B:114   [ RasMol ]  
    Lys A:160 - His A:161   [ RasMol ]  
    Lys B:160 - His B:161   [ RasMol ]  
    Phe A:162 - Pro A:163   [ RasMol ]  
    Phe B:162 - Pro B:163   [ RasMol ]  
 

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 Related Entries

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