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(-) Description

Title :  CRYSTAL STRUCTURE OF A NIEMANN-PICK TYPE C2 PROTEIN FROM JAPANESE CARPENTER ANT IN COMPLEX WITH OLEIC ACID
 
Authors :  Z. Fujimoto, W. Tsuchiya, Y. Ishida, T. Yamazaki
Date :  02 Jul 13  (Deposition) - 05 Feb 14  (Release) - 04 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Immunoglobulin-Like Beta-Sandwich Fold, Carrier Protein, Oleic Acid, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Ishida, W. Tsuchiya, T. Fujii, Z. Fujimoto, M. Miyazawa, J. Ishibashi, S. Matsuyama, Y. Ishikawa, T. Yamazaki
Niemann-Pick Type C2 Protein Mediating Chemical Communication In The Worker Ant
Proc. Natl. Acad. Sci. Usa V. 111 3847 2014
PubMed-ID: 24567405  |  Reference-DOI: 10.1073/PNAS.1323928111

(-) Compounds

Molecule 1 - NIEMANN-PICK TYPE C2 PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET-22B
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneCJAPNPC2
    Organism ScientificCAMPONOTUS JAPONICUS
    Organism Taxid84547

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1OLA1Ligand/IonOLEIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:68 , LYS A:69 , LYS A:70 , PHE A:97 , PHE A:127 , HOH A:354BINDING SITE FOR RESIDUE OLA A 201

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:6 -A:124
2A:21 -A:28
3A:74 -A:83

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Cys A:83 -Pro A:84

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3WEB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:132
 aligned with W5JXD9_9HYME | W5JXD9 from UniProtKB/TrEMBL  Length:132

    Alignment length:132
                                    10        20        30        40        50        60        70        80        90       100       110       120       130  
         W5JXD9_9HYME     1 FVFEDCGSEVGKFSDIIISSCDPSEEKCSIIRESEIHVSMKFTPSVDVKNVEAKAFGVLLDVPVPFPLKKPEICKDPDSGVKCPLKKDVEIEYKVTFFVEKATPALSLEIMWEFRNEKDEKITCVKFPAKIK 132
               SCOP domains d3weba_ A: automated matches                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee.....eeeeeeee.........eeee..eeeeeeeeeee......eeeeeeeee..eeeee.....hhhhh..............eeeeeeeee.......eeeeeeeeee....eeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3web A   1 FVFEDCGSEVGKFSDIIISSCDPSEEKCSIIRESEIHVSMKFTPSVDVKNVEAKAFGVLLDVPVPFPLKKPEICKDPDSGVKCPLKKDVEIEYKVTFFVEKATPALSLEIMWEFRNEKDEKITCVKFPAKIK 132
                                    10        20        30        40        50        60        70        80        90       100       110       120       130  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3WEB)

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(-) Related Entries Specified in the PDB File

3wea APO PROTEIN