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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF THE COFA
 
Authors :  S. Fukakusa, K. Kawahara, S. Nakamura, T. Iwasita, S. Baba, M. Nishimur Y. Kobayashi, T. Honda, T. Iida, T. Taniguchi, T. Ohkubo
Date :  06 Feb 12  (Deposition) - 26 Sep 12  (Release) - 31 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Type Iv Pilin, Colonization, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Fukakusa, K. Kawahara, S. Nakamura, T. Iwashita, S. Baba, M. Nishimura, Y. Kobayashi, T. Honda, T. Iida, T. Taniguchi, T. Ohkubo
Structure Of The Cfa/Iii Major Pilin Subunit Cofa From Huma Enterotoxigenic Escherichia Coli Determined At 0. 90 A Resolution By Sulfur-Sad Phasing
Acta Crystallogr. , Sect. D V. 68 1418 2012
PubMed-ID: 22993096  |  Reference-DOI: 10.1107/S0907444912034464

(-) Compounds

Molecule 1 - CFA/III PILIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET32B
    Expression System StrainORIGAMIB(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneCOFA
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562
    Strain260-1
    SynonymCOFA, MAJOR PILIN SUBUNIT

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3VOR)

(-) Sites  (0, 0)

(no "Site" information available for 3VOR)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:106 -A:170

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3VOR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:182
 aligned with Q59393_ECOLX | Q59393 from UniProtKB/TrEMBL  Length:238

    Alignment length:182
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236  
         Q59393_ECOLX    57 AFDSRTVSELVTNTNTIRVAMKDAYQRDGKYPDYQAPLSLTADSIKTDSTGIAVAQLVQLGKLTPDEARNGISGDYIGIGGAITSSGSTINKGFAMELNGLSQEQCRSILGQVGDNWEYVAVGTSPSGSYDALSAGAVNMLAATDNTTILRSLAANGQVSLTAEKILKTCTATVNSITLASR 238
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhh....hhhhhhhhh...hhhh.ee....ee.eeeeee.........eeeeeeeeehhhhhhhhhhhhhhhh.eeeee......hhhhhh..ee.........eee..........hhhhhh.......eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vor A   1 GSDSRTVSELVTNTNTIRVAMKDAYQRDGKYPDYQAPLSLTADSIKTDSTGIAVAQLVQLGKLTPDEARNGISGDYIGIGGAITSSGSTINKGFAMELNGLSQEQCRSILGQVGDNWEYVAVGTSPSGSYDALSAGAVNMLAATDNTTILRSLAANGQVSLTAEKILKTCTATVNSITLASR 182
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3VOR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VOR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VOR)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q59393_ECOLX | Q59393)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0043230    extracellular organelle    Organized structure of distinctive morphology and function, occurring outside the cell. Includes, for example, extracellular membrane vesicles (EMVs) and the cellulosomes of anaerobic bacteria and fungi.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0009289    pilus    A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q59393_ECOLX | Q593933s0t

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