3VK0 - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HYPOTHETICAL TRANSCRIPTION FACTOR NHTF FROM NEISSERIA

Authors :   H. -C. Wang, T. -P. Ko, M. -L. Wu, H. -J. Wu, S. -C. Ku, A. H. -J. Wang

Date :   01 Nov 11 (Deposition) - 14 Mar 12 (Release) - 14 Mar 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.88

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (2x)
Biol. Unit 2: B,C  (1x)

Keywords :   Hth Motif, Xre Transcription Factor, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. -C. Wang, T. -P. Ko, M. -L. Wu, S. -C. Ku, H. -J. Wu, A. H. -J. Wang
Neisseria Conserved Protein Dmp19 Is A Dna Mimic Protein That Prevents Dna Binding To A Hypothetical Nitrogen-Response Transcription Factor
Nucleic Acids Res. 2012
PubMed-ID: 22373915 | Reference-DOI: 10.1093/NAR/GKS177

Molecule 1 - TRANSCRIPTIONAL REGULATOR
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET21B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	NMB1204
	Organism Scientific	:	NEISSERIA MENINGITIDIS
	Organism Taxid	:	122586
	Strain	:	MC58
	Synonym	:	NHTF

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (2x)	:	A
Biological Unit 2 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3VK0)

(no "Site" information available for 3VK0)

(no "SS Bond" information available for 3VK0)

(no "Cis Peptide Bond" information available for 3VK0)

(no "SAP(SNP)/Variant" information available for 3VK0)

(no "PROSITE Motif" information available for 3VK0)

(no "Exon" information available for 3VK0)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:89
 aligned with Q7DDD9_NEIMB | Q7DDD9 from UniProtKB/TrEMBL  Length:106

    Alignment length:89
                                    14        24        34        44        54        64        74        84         
          Q7DDD9_NEIMB    5 KLTLPAELPDEQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLKLMTN 93
               SCOP domains d3vk0a_ A: automated matches                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhh......hhhhhhhhhhhhh.hhhhhh.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                  3vk0 A  5 KLTLPAELPDEQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLKLMTN 93
                                    14        24        34        44        54        64        74        84

Chain B from PDB  Type:PROTEIN  Length:87
 aligned with Q7DDD9_NEIMB | Q7DDD9 from UniProtKB/TrEMBL  Length:106

    Alignment length:87
                                    14        24        34        44        54        64        74        84       
          Q7DDD9_NEIMB    5 KLTLPAELPDEQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLKLM 91
               SCOP domains d3vk0b_ B: automated matches                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                  3vk0 B  5 KLTLPAELPDEQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLKLM 91
                                    14        24        34        44        54        64        74        84

Chain C from PDB  Type:PROTEIN  Length:88
 aligned with Q7DDD9_NEIMB | Q7DDD9 from UniProtKB/TrEMBL  Length:106

    Alignment length:88
                                    14        24        34        44        54        64        74        84        
          Q7DDD9_NEIMB    5 KLTLPAELPDEQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLKLMT 92
               SCOP domains d3vk0c_ C: automated matches                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhh.hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  3vk0 C  5 KLTLPAELPDEQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLKLMT 92
                                    14        24        34        44        54        64        74        84

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: lambda repressor-like DNA-binding domains (180)

Superfamily: lambda repressor-like DNA-binding domains (180)

Family: automated matches (23)

Protein domain: automated matches (23)

Neisseria meningitidis [TaxId: 122586] (1)

1a	d3vk0a_	A:
1b	d3vk0b_	B:
1c	d3vk0c_	C:

(no "CATH Domain" information available for 3VK0)

(no "Pfam Domain" information available for 3VK0)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (Q7DDD9_NEIMB | Q7DDD9)

molecular function
	GO:0003677		DNA binding		Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0043565		sequence-specific DNA binding		Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

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Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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