3TGV - JenaLib

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Title :   CRYSTAL STRUCTURE OF HUTZ,THE HEME STORSGE PROTEIN FROM VIBRIO CHOLERAE

Authors :   X. Liu, J. Gong, Z. Wang, Q. Du, T. Wei, D. Zhu, Y. Huang, S. Xu, L. Gu

Date :   17 Aug 11 (Deposition) - 22 Aug 12 (Release) - 22 Aug 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Heme Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   X. Liu, J. Gong, Z. Wang, Q. Du, T. Wei, D. Zhu, Y. Huang, S. Xu, L. Gu
Crystal Structure Of Hutz, The Heme Storsge Protein From Vibrio Cholerae
To Be Published
PubMed: search

Molecule 1 - HEME-BINDING PROTEIN HUTZ
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 13-150
	Gene	:	HUTZ
	Mutation	:	YES
	Organism Scientific	:	VIBRIO CHOLERAE
	Organism Taxid	:	345073
	Strain	:	O395

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	BEZ	4	Ligand/Ion	BENZOIC ACID

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	BEZ	2	Ligand/Ion	BENZOIC ACID

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	BEZ	2	Ligand/Ion	BENZOIC ACID

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:149 , GLY A:150 , LEU A:151 , GLU A:152 , ARG B:22 , GLN B:48 , TYR B:53 , PHE B:95 , PRO B:140 , HOH B:175	BINDING SITE FOR RESIDUE BEZ B 1
2	AC2	SOFTWARE	ARG A:22 , TYR A:53 , PHE A:95 , PRO A:140 , LEU A:144 , LEU B:14 , PHE B:149 , GLY B:150 , LEU B:151 , GLU B:152 , HOH B:181	BINDING SITE FOR RESIDUE BEZ B 160
3	AC3	SOFTWARE	ARG C:22 , TYR C:53 , PHE C:95 , PRO C:140 , HOH C:170 , LEU D:14 , PHE D:149 , GLY D:150 , LEU D:151 , GLU D:152	BINDING SITE FOR RESIDUE BEZ C 1
4	AC4	SOFTWARE	LEU C:14 , PHE C:149 , GLY C:150 , LEU C:151 , GLU C:152 , ARG D:22 , GLN D:48 , TYR D:53 , PHE D:95 , PRO D:140 , LEU D:144 , HOH D:170	BINDING SITE FOR RESIDUE BEZ D 1

(no "SS Bond" information available for 3TGV)

(no "Cis Peptide Bond" information available for 3TGV)

(no "SAP(SNP)/Variant" information available for 3TGV)

(no "PROSITE Motif" information available for 3TGV)

(no "Exon" information available for 3TGV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:142
 aligned with A0A0H3AGE3_V | A0A0H3AGE3 from UniProtKB/TrEMBL  Length:176

    Alignment length:157
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       
         A0A0H3AGE3_V    12 GRLEPEIKEFRQERKTLQLATVDAQGRPNVSYAPFVQNQEGYFVLISHIARHARNLEVNPQVSIMMIEDETEAKQLFARKRLTFDAVASMVERDSELWCQVIAQMGERFGEIIDGLSQLQDFMLFRLQPEHGLFVKGFGQAYQVSGDDLVDFVHLEE 168
               SCOP domains d3tgva_ A: automated matches                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.eeeeeee.....eeeeeeeeeee..eeeeeee..hhhhhhhhhh.eeeeeee.hhhhh.hhhhh.eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee....eee.hh---------------hhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tgv A  12 MRLEPEIKEFRQERKTLQLATVDAQGRPNVSYAPFVQNQEGYFVLISHIARHARNLEVNPQVSIMMIEDETEAKQLFARKRLTFDAVASMVERDSELWCQVIAQMGERFGEIIDGLSQLQDFMLFRLQPEQGLFVKGFG---------------LEH 153
                                    21        31        41        51        61        71        81        91       101       111       121       131       141        |-         -    |  
                                                                                                                                                                    150             151

Chain B from PDB  Type:PROTEIN  Length:142
 aligned with A0A0H3AGE3_V | A0A0H3AGE3 from UniProtKB/TrEMBL  Length:176

    Alignment length:157
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       
         A0A0H3AGE3_V    12 GRLEPEIKEFRQERKTLQLATVDAQGRPNVSYAPFVQNQEGYFVLISHIARHARNLEVNPQVSIMMIEDETEAKQLFARKRLTFDAVASMVERDSELWCQVIAQMGERFGEIIDGLSQLQDFMLFRLQPEHGLFVKGFGQAYQVSGDDLVDFVHLEE 168
               SCOP domains d3tgvb_ B: automated matches                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.eeeeeee.....eeeeeeeeeee..eeeeeee..hhhhhhhhhh.eeeeeee.......hhhhh.eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee....eee.hh---------------hhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tgv B  12 MRLEPEIKEFRQERKTLQLATVDAQGRPNVSYAPFVQNQEGYFVLISHIARHARNLEVNPQVSIMMIEDETEAKQLFARKRLTFDAVASMVERDSELWCQVIAQMGERFGEIIDGLSQLQDFMLFRLQPEQGLFVKGFG---------------LEH 153
                                    21        31        41        51        61        71        81        91       101       111       121       131       141        |-         -    |  
                                                                                                                                                                    150             151

Chain C from PDB  Type:PROTEIN  Length:142
 aligned with A0A0H3AGE3_V | A0A0H3AGE3 from UniProtKB/TrEMBL  Length:176

    Alignment length:157
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       
         A0A0H3AGE3_V    12 GRLEPEIKEFRQERKTLQLATVDAQGRPNVSYAPFVQNQEGYFVLISHIARHARNLEVNPQVSIMMIEDETEAKQLFARKRLTFDAVASMVERDSELWCQVIAQMGERFGEIIDGLSQLQDFMLFRLQPEHGLFVKGFGQAYQVSGDDLVDFVHLEE 168
               SCOP domains d3tgvc_ C: automated matches                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.eeeeeee.....eeeeeeeeeee..eeeeeee..hhhhhhhhhh.eeeeeee.......hhhhh.eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee....eee.hh---------------hhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tgv C  12 MRLEPEIKEFRQERKTLQLATVDAQGRPNVSYAPFVQNQEGYFVLISHIARHARNLEVNPQVSIMMIEDETEAKQLFARKRLTFDAVASMVERDSELWCQVIAQMGERFGEIIDGLSQLQDFMLFRLQPEQGLFVKGFG---------------LEH 153
                                    21        31        41        51        61        71        81        91       101       111       121       131       141        |-         -    |  
                                                                                                                                                                    150             151

Chain D from PDB  Type:PROTEIN  Length:142
 aligned with A0A0H3AGE3_V | A0A0H3AGE3 from UniProtKB/TrEMBL  Length:176

    Alignment length:157
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       
         A0A0H3AGE3_V    12 GRLEPEIKEFRQERKTLQLATVDAQGRPNVSYAPFVQNQEGYFVLISHIARHARNLEVNPQVSIMMIEDETEAKQLFARKRLTFDAVASMVERDSELWCQVIAQMGERFGEIIDGLSQLQDFMLFRLQPEHGLFVKGFGQAYQVSGDDLVDFVHLEE 168
               SCOP domains d3tgvd_ D: automated matches                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.eeeeeee.....eeeeeeeeeee..eeeeeee..hhhhhhhhhh.eeeeeee.......hhhhh.eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee....eee.hh---------------hhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3tgv D  12 MRLEPEIKEFRQERKTLQLATVDAQGRPNVSYAPFVQNQEGYFVLISHIARHARNLEVNPQVSIMMIEDETEAKQLFARKRLTFDAVASMVERDSELWCQVIAQMGERFGEIIDGLSQLQDFMLFRLQPEQGLFVKGFG---------------LEH 153
                                    21        31        41        51        61        71        81        91       101       111       121       131       141        |-         -    |  
                                                                                                                                                                    150             151

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Class: All beta proteins (24004)

Fold: Split barrel-like (99)

Superfamily: FMN-binding split barrel (90)

Family: automated matches (24)

Protein domain: automated matches (24)

Vibrio cholerae [TaxId: 345073] (1)

1a	d3tgva_	A:
1b	d3tgvb_	B:
1c	d3tgvc_	C:
1d	d3tgvd_	D:

(no "CATH Domain" information available for 3TGV)

(no "Pfam Domain" information available for 3TGV)

Asymmetric Unit(hide GO term definitions)

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