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(-) Description

Title :  THREE N-TERMINAL DOMAINS OF THE BACTERIOPHAGE RB49 HIGHLY IMMUNOGENIC OUTER CAPSID PROTEIN (HOC)
 
Authors :  A. Fokine, M. Z. Islam, Z. Zhang, V. D. Bowman, V. B. Rao, M. G. Rossmann
Date :  16 Jun 11  (Deposition) - 29 Jun 11  (Release) - 30 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A
Keywords :  Immunoglobulin-Like Domain, Phage Capsid Decorative Protein, Interaction With Bacteria, Bacterial Surface, E. Coli Surface, Virus Surface, Bacteriophage Surface, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Fokine, M. Z. Islam, Z. Zhang, V. D. Bowman, V. B. Rao, M. G. Rossmann
Structure Of The Three N-Terminal Immunoglobulin Domains Of The Highly Immunogenic Outer Capsid Protein From A T4-Like Bacteriophage.
J. Virol. V. 85 8141 2011
PubMed-ID: 21632759  |  Reference-DOI: 10.1128/JVI.00847-11

(-) Compounds

Molecule 1 - HOC HEAD OUTER CAPSID PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Fragment3 N-TERMINAL IMMUNOGLOBULIN DOMAINS (UNP RESIDUES 1-304)
    GeneHOC
    Organism ScientificENTEROBACTERIA PHAGE RB49
    Organism Taxid50948

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:111 , HIS A:113 , GLU A:233BINDING SITE FOR RESIDUE MG A 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3SHS)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:30 -Pro A:31

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3SHS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3SHS)

(-) Exons   (0, 0)

(no "Exon" information available for 3SHS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:303
 aligned with Q7Y442_9CAUD | Q7Y442 from UniProtKB/TrEMBL  Length:404

    Alignment length:303
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301   
         Q7Y442_9CAUD     2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSMEVVK 304
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Ig_2-3shsA01 A:214-295                                                            --------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Ig_2-3shsA02 A:214-295                                                            --------- Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Ig_2-3shsA03 A:214-295                                                            --------- Pfam domains (3)
         Sec.struct. author .eeeeeee..........eeeeeeeee.......eeeeeee..ee......eeee...hhhhheeeeeeeee.....eee...eee....eeeee....eeee.....eeeeeeeee............eeeeee..eeee...eeee...hhhhheeeeeeee..hhhhheeeeeeeee.eeeeee....eeeee....eee..eeeee.........eeeeeeeeeee.......eeee...ee....eee.....eee...hhhhheeeeeeeeeeee....eeeeeeee...eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3shs A   2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSMEVVK 304
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301   

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3SHS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3SHS)

(-) Pfam Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Clan: Ig (577)
(-)
Family: Ig_2 (52)
1aIg_2-3shsA01A:214-295
1bIg_2-3shsA02A:214-295
1cIg_2-3shsA03A:214-295

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3SHS)

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