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(-) Description

Title :  AC-ACHBP LIGAND BINDING DOMAIN MUTATED TO HUMAN ALPHA-7 NACHR
 
Authors :  A. Nemecz, P. W. Taylor
Date :  15 Jun 11  (Deposition) - 26 Oct 11  (Release) - 17 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Keywords :  Human Nicotinic Acetylcholine Receptor Binding Protein, Methyllycaconitine Binding, Glycosylation, Receptor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Nemecz, P. Taylor
Creating An Alpha-7 Nicotinic Acetylcholine Recognition Domain From The Acetylcholine Binding Protein: Crystallographic And Ligand Selectivity Analyses
J. Biol. Chem. V. 286 42555 2011
PubMed-ID: 22009746  |  Reference-DOI: 10.1074/JBC.M111.286583

(-) Compounds

Molecule 1 - SOLUBLE ACETYLCHOLINE RECEPTOR
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293S GNT1-
    Expression System Plasmid: PFLAG-CMV3
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: UNP ENTRY 18-236
    Gene: LOC100533247 SOLUBLE ACETYLCHOLINE RECEPTOR
    Organism Common: CALIFORNIA SEA HARE
    Organism Scientific: APLYSIA CALIFORNICA
    Organism Taxid: 6500

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 49)

Asymmetric Unit (7, 49)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2BMA2Ligand/IonBETA-D-MANNOSE
3MG5Ligand/IonMAGNESIUM ION
4MLK10Ligand/IonMETHYLLYCACONITINE
5MPD7Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
6MRD5Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
7NAG19Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (4, 22)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2BMA-1Ligand/IonBETA-D-MANNOSE
3MG-1Ligand/IonMAGNESIUM ION
4MLK5Ligand/IonMETHYLLYCACONITINE
5MPD3Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
6MRD4Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
7NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (6, 22)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2BMA2Ligand/IonBETA-D-MANNOSE
3MG-1Ligand/IonMAGNESIUM ION
4MLK5Ligand/IonMETHYLLYCACONITINE
5MPD4Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
6MRD1Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
7NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (48, 48)

Asymmetric Unit (48, 48)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:-3 , HIS A:1 , ASP G:-3 , HIS G:1BINDING SITE FOR RESIDUE MG A 222
02AC2SOFTWAREASN A:110 , SER A:112 , GLN A:116 , NAG A:251BINDING SITE FOR RESIDUE NAG A 250
03AC3SOFTWARENAG A:250BINDING SITE FOR RESIDUE NAG A 251
04AC4SOFTWARETYR A:93 , SER A:94 , LYS A:143 , SER A:146 , TRP A:147 , TYR A:149 , ARG A:186 , TYR A:195 , ASP A:197 , LEU E:38 , TRP E:55 , GLN E:116 , LEU E:118 , SER E:167BINDING SITE FOR RESIDUE MLK A 301
05AC5SOFTWARETRP A:86 , TYR A:149 , LYS E:10BINDING SITE FOR RESIDUE MRD A 305
06AC6SOFTWARETHR A:80 , SER A:81 , ASN A:106 , TRP B:86 , THR B:87 , TYR B:149BINDING SITE FOR RESIDUE MPD A 223
07AC7SOFTWAREALA A:82 , ALA A:83 , ILE A:85 , THR A:87BINDING SITE FOR RESIDUE MPD A 306
08AC8SOFTWAREASP B:-3 , HIS B:1 , ASP F:-3 , HIS F:1BINDING SITE FOR RESIDUE MG B 222
09AC9SOFTWAREASN B:110 , SER B:111 , SER B:112 , HIS B:114BINDING SITE FOR RESIDUE NAG B 250
10BC1SOFTWAREASN B:74 , LYS C:25BINDING SITE FOR RESIDUE NAG B 275
11BC2SOFTWARETRP A:55 , LEU A:118 , SER A:167 , TYR B:93 , LYS B:143 , SER B:146 , TRP B:147 , TYR B:149 , ARG B:186 , TYR B:188 , TYR B:195 , ASP B:197BINDING SITE FOR RESIDUE MLK B 301
12BC3SOFTWARETHR B:80 , SER B:81 , ASN B:106 , TRP C:86 , TYR C:149BINDING SITE FOR RESIDUE MRD B 305
13BC4SOFTWAREASP C:-3 , HIS C:1 , ASP J:-3 , HIS J:1BINDING SITE FOR RESIDUE MG C 222
14BC5SOFTWARETHR C:76 , ASN C:110 , SER C:112 , HIS C:114BINDING SITE FOR RESIDUE NAG C 250
15BC6SOFTWARETRP B:55 , GLN B:116 , LEU B:118 , SER B:167 , TYR C:93 , LYS C:143 , TRP C:147 , TYR C:149 , ARG C:186 , TYR C:188 , TYR C:195 , ASP C:197 , HOH C:333BINDING SITE FOR RESIDUE MLK C 301
16BC7SOFTWAREASP C:12 , LEU C:13 , ARG C:16 , SER C:64 , MET C:66 , TRP C:67 , TYR C:72BINDING SITE FOR RESIDUE MPD C 306
17BC8SOFTWAREASN C:106 , TRP D:86 , TYR D:149BINDING SITE FOR RESIDUE MRD D 305
18BC9SOFTWARETHR D:76 , ASN D:110 , SER D:111 , SER D:112 , HIS D:114 , NAG D:251BINDING SITE FOR RESIDUE NAG D 250
19CC1SOFTWARENAG D:250BINDING SITE FOR RESIDUE NAG D 251
20CC2SOFTWARETRP C:55 , GLN C:116 , LEU C:118 , SER C:167 , TYR D:93 , LYS D:143 , TRP D:147 , TYR D:149 , TYR D:188 , TYR D:195 , ASP D:197BINDING SITE FOR RESIDUE MLK D 301
21CC3SOFTWAREASP E:-3 , HIS E:1 , ASP H:-3 , HIS H:1BINDING SITE FOR RESIDUE MG E 222
22CC4SOFTWARETHR E:76 , ASN E:110 , SER E:112 , HIS E:114 , NAG E:251BINDING SITE FOR RESIDUE NAG E 250
23CC5SOFTWARENAG E:250 , HOH E:327BINDING SITE FOR RESIDUE NAG E 251
24CC6SOFTWARETRP E:86 , TYR E:149BINDING SITE FOR RESIDUE MRD E 305
25CC7SOFTWAREASN E:74 , THR E:76BINDING SITE FOR RESIDUE NAG E 275
26CC8SOFTWARETRP D:55 , LEU D:118 , SER D:167 , TYR E:93 , LYS E:143 , SER E:146 , TRP E:147 , SER E:148 , TYR E:149 , ARG E:186 , TYR E:188 , TYR E:195 , ASP E:197BINDING SITE FOR RESIDUE MLK E 301
27CC9SOFTWARETRP F:86 , TYR F:149 , SER J:81BINDING SITE FOR RESIDUE MRD F 305
28DC1SOFTWAREASN F:110 , SER F:111 , SER F:112 , HIS F:114BINDING SITE FOR RESIDUE NAG F 250
29DC2SOFTWARETYR F:93 , LYS F:143 , TRP F:147 , TYR F:149 , ARG F:186 , TYR F:188 , TYR F:195 , ASP F:197 , TRP J:55 , GLN J:116 , LEU J:118 , SER J:167BINDING SITE FOR RESIDUE MLK F 301
30DC3SOFTWARETHR G:76 , ASN G:110 , HIS G:114 , NAG G:251BINDING SITE FOR RESIDUE NAG G 250
31DC4SOFTWAREHIS G:114 , NAG G:250BINDING SITE FOR RESIDUE NAG G 251
32DC5SOFTWARETRP F:55 , GLN F:116 , LEU F:118 , SER F:167 , TYR G:93 , LYS G:143 , SER G:146 , TRP G:147 , TYR G:149 , ARG G:186 , TYR G:195 , ASP G:197BINDING SITE FOR RESIDUE MLK G 301
33DC6SOFTWAREASN F:106 , TRP G:86 , TYR G:149BINDING SITE FOR RESIDUE MPD G 305
34DC7SOFTWAREASN G:106 , TRP H:86 , TYR H:149BINDING SITE FOR RESIDUE MPD G 222
35DC8SOFTWAREASN H:110 , SER H:112 , HIS H:114 , NAG H:251BINDING SITE FOR RESIDUE NAG H 250
36DC9SOFTWARENAG H:250 , BMA H:252BINDING SITE FOR RESIDUE NAG H 251
37EC1SOFTWARENAG H:251 , HOH H:338BINDING SITE FOR RESIDUE BMA H 252
38EC2SOFTWARETRP G:55 , GLN G:116 , LEU G:118 , SER G:167 , TYR H:93 , LYS H:143 , SER H:146 , TRP H:147 , TYR H:149 , ARG H:186 , TYR H:195 , ASP H:197BINDING SITE FOR RESIDUE MLK H 301
39EC3SOFTWAREASP D:-3 , HIS D:1 , ASP I:-3 , HIS I:1BINDING SITE FOR RESIDUE MG I 222
40EC4SOFTWAREASN I:110 , SER I:112 , HIS I:114 , HOH I:335BINDING SITE FOR RESIDUE NAG I 250
41EC5SOFTWAREASN I:74BINDING SITE FOR RESIDUE NAG I 275
42EC6SOFTWARETRP H:55 , GLN H:116 , LEU H:118 , SER H:167 , TYR I:93 , SER I:94 , LYS I:143 , SER I:146 , TRP I:147 , TYR I:149 , TYR I:188 , CYS I:190 , TYR I:195BINDING SITE FOR RESIDUE MLK I 301
43EC7SOFTWAREARG I:79 , PRO J:21 , TRP J:86 , TYR J:149BINDING SITE FOR RESIDUE MPD J 305
44EC8SOFTWARELYS H:10 , SER H:81 , ASN H:106 , TRP I:86 , TYR I:149BINDING SITE FOR RESIDUE MPD I 305
45EC9SOFTWARETHR J:76 , ASN J:110 , SER J:111 , SER J:112 , HIS J:114 , NAG J:251BINDING SITE FOR RESIDUE NAG J 250
46FC1SOFTWARENAG J:250 , BMA J:252BINDING SITE FOR RESIDUE NAG J 251
47FC2SOFTWARENAG J:251BINDING SITE FOR RESIDUE BMA J 252
48FC3SOFTWARETRP I:55 , SER I:167 , TYR J:93 , LYS J:143 , SER J:146 , TRP J:147 , TYR J:149 , ARG J:186 , TYR J:188 , TYR J:195 , ASP J:197BINDING SITE FOR RESIDUE MLK J 301

(-) SS Bonds  (20, 20)

Asymmetric Unit
No.Residues
1A:127 -A:140
2A:190 -A:191
3B:127 -B:140
4B:190 -B:191
5C:127 -C:140
6C:190 -C:191
7D:127 -D:140
8D:190 -D:191
9E:127 -E:140
10E:190 -E:191
11F:127 -F:140
12F:190 -F:191
13G:127 -G:140
14G:190 -G:191
15H:127 -H:140
16H:190 -H:191
17I:127 -I:140
18I:190 -I:191
19J:127 -J:140
20J:190 -J:191

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3SH1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3SH1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3SH1)

(-) Exons   (0, 0)

(no "Exon" information available for 3SH1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:214
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:214
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221    
         Q8WSF8_APLCA    12 ACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR 225
               SCOP domains d3sh1a_ A: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee...............eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sh1 A  -5 DDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRSERFYECCKEPYPDVNLVVKFRERR 208
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    


Chain B from PDB  Type:PROTEIN  Length:215
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:215
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220     
         Q8WSF8_APLCA    11 VACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR 225
               SCOP domains d3sh1b_ B: automated matches                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhh....eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee...............eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sh1 B  -6 KDDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRSERFYECCKEPYPDVNLVVKFRERR 208
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203     


Chain C from PDB  Type:PROTEIN  Length:216
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:216
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220      
         Q8WSF8_APLCA    11 VACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRA 226
               SCOP domains d3sh1c_ C: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...eeeee........eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee...............eeeeeeeeeeeee........eeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3sh1 C  -6 KDDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRSERFYECCKEPYPDVNLVVKFRERRA 209
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203      


Chain D from PDB  Type:PROTEIN  Length:214
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:214
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    
         Q8WSF8_APLCA    11 VACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 224
               SCOP domains d3sh1d_ D: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh..........eeeee........eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeee................eeeeeeeeeeeeeee..eeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sh1 D  -6 KDDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRSERFYECCKEPYPDVNLVVKFRER 207
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203    


Chain E from PDB  Type:PROTEIN  Length:215
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:215
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220     
         Q8WSF8_APLCA    11 VACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR 225
               SCOP domains d3sh1e_ E: automated matches                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee..........eeeee........eee.......ee....eeeee.eeeeee..eeeeeee...........eeeeeeeee.......eeeee...............eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sh1 E  -6 KDDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRSERFYECCKEPYPDVNLVVKFRERR 208
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203     


Chain F from PDB  Type:PROTEIN  Length:214
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:214
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    
         Q8WSF8_APLCA    11 VACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 224
               SCOP domains d3sh1f_ F: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeee......hhhhhh...eeeee.hhh....eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee...............eeeeeeeeeeeeee......eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sh1 F  -6 KDDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRSERFYECCKEPYPDVNLVVKFRER 207
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203    


Chain G from PDB  Type:PROTEIN  Length:214
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:214
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    
         Q8WSF8_APLCA    11 VACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 224
               SCOP domains d3sh1g_ G: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee..........eeeee.hhh....eee.......ee....eeeee.eeeeee..eeeeeee...........eeeeeeeee.......eeeee...............eeeeeeeeeeeee........eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sh1 G  -6 KDDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRSERFYECCKEPYPDVNLVVKFRER 207
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203    


Chain H from PDB  Type:PROTEIN  Length:215
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:215
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220     
         Q8WSF8_APLCA    11 VACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR 225
               SCOP domains d3sh1h_ H: automated matches                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh..............eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.hhhhhh...eeeee.hhh....eee..eeeeeee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee...............eeeeeeeeeeeeeee..eeeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sh1 H  -6 KDDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRSERFYECCKEPYPDVNLVVKFRERR 208
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203     


Chain I from PDB  Type:PROTEIN  Length:214
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:214
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221    
         Q8WSF8_APLCA    12 ACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR 225
               SCOP domains d3sh1i_ I: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh.............eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee.hhhhhh...eeeee.hhh....eee.......ee....eeeee.eeeeee..eeeeeee...........eeeeeeeee.......eeee................eeeeeeeeeeeee........eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sh1 I  -5 DDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRSERFYECCKEPYPDVNLVVKFRERR 208
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    


Chain J from PDB  Type:PROTEIN  Length:215
 aligned with Q8WSF8_APLCA | Q8WSF8 from UniProtKB/TrEMBL  Length:236

    Alignment length:215
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220     
         Q8WSF8_APLCA    11 VACVGQAHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR 225
               SCOP domains d3sh1j_ J: automated matches                                                                                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh..............eeeeeeeeeeeeeeee....eeeeeeeeeeeee...............eeeee........eee.......ee....eeeee...eeee..eeeeeee...........eeeeeeeee.......eeeee...............eeeeeeeeeee............eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3sh1 J  -6 KDDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRSERFYECCKEPYPDVNLVVKFRERR 208
                                     3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 10)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3SH1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3SH1)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (Q8WSF8_APLCA | Q8WSF8)
molecular function
    GO:0005230    extracellular ligand-gated ion channel activity    Enables the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0034220    ion transmembrane transport    A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8WSF8_APLCA | Q8WSF8: 2br7 2br8 2byn 2byp 2byq 2byr 2bys 2c9t 2pgz 2ph9 2uz6 2w8f 2w8g 2wn9 2wnc 2wnj 2wnl 2wzy 2x00 2xnt 2xnu 2xnv 2xys 2xyt 2xz5 2xz6 2y54 2y56 2y57 2y58 2y7y 2ymd 2yme 3c79 3c84 3gua 3peo 3pmz 3sio 3t4m 4aft 4bfq 4bqt 4dbm 4ez1 4frr 4wv9 4xhe 4xk9 4zjs 4zk4 5ain 5brx 5bw2 5co5 5jme 5ke4 5kzu 5lxb 5syo 5tvc

(-) Related Entries Specified in the PDB File

2byr 3sio 3t4m