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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE FUMARYLACETOACETATE HYDROLASE FAMILY PROTEIN FROM YERSINIA PESTIS CO92
 
Authors :  B. Nocek, M. Zhou, S. Grimshaw, W. F. Anderson, A. Joachimiak, Center F Structural Genomics Of Infectious Diseases (Csgid)
Date :  20 May 11  (Deposition) - 29 Jun 11  (Release) - 29 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Csgid, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Nocek, M. Zhou, S. Grimshaw, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of A Putative Fumarylacetoacetate Hydrolase Family Protein From Yersinia Pestis Co92
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE FUMARYLACETOACETATE HYDROLASE FAMILY PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: Y2229
    Organism Scientific: YERSINIA PESTIS
    Organism Taxid: 214092
    Strain: CO92
    Synonym: PUTATIVE FUMARYLACETOACETATE HYDROLASE FAMILY PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 31)

Asymmetric Unit (3, 31)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2MSE25Mod. Amino AcidSELENOMETHIONINE
3SO45Ligand/IonSULFATE ION
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE13Mod. Amino AcidSELENOMETHIONINE
3SO43Ligand/IonSULFATE ION
Biological Unit 2 (2, 14)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE12Mod. Amino AcidSELENOMETHIONINE
3SO42Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:23 , SER A:24 , HIS A:29 , MSE A:33 , GLU A:70 , GLN A:108 , LYS A:122 , HOH A:346 , HOH A:424BINDING SITE FOR RESIDUE SO4 A 219
2AC2SOFTWARETRP A:7 , LYS A:211 , THR A:212 , HOH A:458 , HOH A:468BINDING SITE FOR RESIDUE SO4 A 220
3AC3SOFTWAREGLY B:23 , SER B:24 , HIS B:29 , GLU B:70 , LYS B:122 , HOH B:317 , HOH B:445BINDING SITE FOR RESIDUE SO4 B 219
4AC4SOFTWAREGLY C:23 , SER C:24 , HIS C:29 , GLN C:108 , TRP C:118 , LYS C:122 , HOH C:233 , HOH C:241BINDING SITE FOR RESIDUE SO4 C 219
5AC5SOFTWARESER D:24 , HIS D:29 , GLU D:70 , TRP D:118 , LYS D:122 , HOH D:480BINDING SITE FOR RESIDUE SO4 D 219
6AC6SOFTWARELYS D:211BINDING SITE FOR RESIDUE CL D 220

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3S52)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3S52)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3S52)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3S52)

(-) Exons   (0, 0)

(no "Exon" information available for 3S52)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:218
 aligned with Q8D0F9_YERPE | Q8D0F9 from UniProtKB/TrEMBL  Length:230

    Alignment length:218
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222        
         Q8D0F9_YERPE    13 MYQHRDWQGALLDFPVNKVVCVGSNYAEHIKEMGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLIGTPLKQASEDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDMITPIIPLISYMSRFFTLRAGDIVLTGTPQGVGPMQSGDMLKIMLNGKTVNTRII 230
               SCOP domains d3s52a_ A: automated matches                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeee..hhhhhhhh........eeeeee...eee.............eee.eeeeeee.......hhhhhhhheeeeeeee..eehhhhhhhhhhh..hhhhhh....eee...eehhhhhhhhh.eeeeee..eeeeeee.hhh..hhhhhhhhhhhhh......eee.......eee....eeeeee..eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s52 A   1 mYQHRDWQGALLDFPVNKVVCVGSNYAEHIKEmGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLIGTPLKQASEDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDmITPIIPLISYmSRFFTLRAGDIVLTGTPQGVGPmQSGDmLKImLNGKTVNTRII 218
                            |       10        20        30  |     40        50        60        70        80        90       100       110       120       130       140       150       160   |   170    |  180       190       200  |   |210        
                            |                              33-MSE                                                                                                                            164-MSE    175-MSE                198-MSE|   |           
                            1-MSE                                                                                                                                                                                                   203-MSE           
                                                                                                                                                                                                                                        207-MSE       


Chain B from PDB  Type:PROTEIN  Length:211
 aligned with Q8D0F9_YERPE | Q8D0F9 from UniProtKB/TrEMBL  Length:230

    Alignment length:218
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222        
         Q8D0F9_YERPE    13 MYQHRDWQGALLDFPVNKVVCVGSNYAEHIKEMGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLIGTPLKQASEDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDMITPIIPLISYMSRFFTLRAGDIVLTGTPQGVGPMQSGDMLKIMLNGKTVNTRII 230
               SCOP domains d3s52b_ B: automated matches                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeee.......-------....eeeeee...eee.............eee.eeeeeee.......hhhhhhhheeeeeeee..eehhhhhhhhhhh..hhhhhh....eee...eehhhhhhhhh.eeeeee..eeeeeee.hhh..hhhhhhhhhhh........eee.......eee....eeeeee..eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s52 B   1 mYQHRDWQGALLDFPVNKVVCVGSNYAEHI-------SVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLIGTPLKQASEDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDmITPIIPLISYmSRFFTLRAGDIVLTGTPQGVGPmQSGDmLKImLNGKTVNTRII 218
                            |       10        20        30       |40        50        60        70        80        90       100       110       120       130       140       150       160   |   170    |  180       190       200  |   |210        
                            1-MSE                       30      38                                                                                                                           164-MSE    175-MSE                198-MSE|   |           
                                                                                                                                                                                                                                    203-MSE           
                                                                                                                                                                                                                                        207-MSE       


Chain C from PDB  Type:PROTEIN  Length:217
 aligned with Q8D0F9_YERPE | Q8D0F9 from UniProtKB/TrEMBL  Length:230

    Alignment length:217
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       
         Q8D0F9_YERPE    14 YQHRDWQGALLDFPVNKVVCVGSNYAEHIKEMGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLIGTPLKQASEDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDMITPIIPLISYMSRFFTLRAGDIVLTGTPQGVGPMQSGDMLKIMLNGKTVNTRII 230
               SCOP domains d3s52c_ C: automated matches                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeee..hhhhhhhh........eeeeee...eee.............eee.eeeeeee.......hhhhhhhheeeeeeee..eehhhhhhhhhhh..hhhhhh....eee...eehhhhhhhhh.eeeeee..eeeeeee.hhh..hhhhhhhhhhhhh......eee.......eee....eeeeee..eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s52 C   2 YQHRDWQGALLDFPVNKVVCVGSNYAEHIKEmGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLIGTPLKQASEDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDmITPIIPLISYmSRFFTLRAGDIVLTGTPQGVGPmQSGDmLKImLNGKTVNTRII 218
                                    11        21        31 |      41        51        61        71        81        91       101       111       121       131       141       151       161  |    171   |   181       191      |201 |   | 211       
                                                          33-MSE                                                                                                                            164-MSE    175-MSE                198-MSE|   |           
                                                                                                                                                                                                                                   203-MSE           
                                                                                                                                                                                                                                       207-MSE       


Chain D from PDB  Type:PROTEIN  Length:208
 aligned with Q8D0F9_YERPE | Q8D0F9 from UniProtKB/TrEMBL  Length:230

    Alignment length:218
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222        
         Q8D0F9_YERPE    13 MYQHRDWQGALLDFPVNKVVCVGSNYAEHIKEMGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLIGTPLKQASEDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDMITPIIPLISYMSRFFTLRAGDIVLTGTPQGVGPMQSGDMLKIMLNGKTVNTRII 230
               SCOP domains d3s52d_ D: automated matches                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------FAA_hydrolas          e-3s52D01 D:18-217                                                                                                                                                                - Pfam domains (1)
           Pfam domains (2) -----------------FAA_hydrolas          e-3s52D02 D:18-217                                                                                                                                                                - Pfam domains (2)
           Pfam domains (3) -----------------FAA_hydrolas          e-3s52D03 D:18-217                                                                                                                                                                - Pfam domains (3)
           Pfam domains (4) -----------------FAA_hydrolas          e-3s52D04 D:18-217                                                                                                                                                                - Pfam domains (4)
         Sec.struct. author .................eeeeee......----------..eeeeee...eee.............eee.eeeeeee.......hhhhhhhheeeeeeee..eehhhhhhhhhhh..hhhhhh....eee...eehhhhhhhhh.eeeeee..eeeeeee.hhh..hhhhhhhhhhhhh......eee.......eee....eeeeee..eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s52 D   1 mYQHRDWQGALLDFPVNKVVCVGSNYAEH----------EPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLIGTPLKQASEDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDmITPIIPLISYmSRFFTLRAGDIVLTGTPQGVGPmQSGDmLKImLNGKTVNTRII 218
                            |       10        20        |-        40        50        60        70        80        90       100       110       120       130       140       150       160   |   170    |  180       190       200  |   |210        
                            1-MSE                      29         40                                                                                                                         164-MSE    175-MSE                198-MSE|   |           
                                                                                                                                                                                                                                    203-MSE           
                                                                                                                                                                                                                                        207-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3S52)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: FAH (11)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q8D0F9_YERPE | Q8D0F9)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  3s52
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 Related Entries

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