3RT0 - JenaLib

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Title :   CRYSTAL STRUCTURE OF PYL10-HAB1 COMPLEX IN THE ABSENCE OF ABSCISIC ACID (ABA)

Authors :   Q. Hao, P. Yin, W. Li, L. Wang, C. Yan, J. Wang, N. Yan

Date :   02 May 11 (Deposition) - 22 Jun 11 (Release) - 22 Jun 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.11

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B,D  (1x)

Keywords :   Pyl10-Hab1 Binary Complex, Apo-Pyl10 Inhibits Hab1 Dephosphorylation Activity, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Q. Hao, P. Yin, W. Li, L. Wang, C. Yan, Z. Lin, J. Z. Wu, J. Wang, S. F. Yan, N. Yan
The Molecular Basis Of Aba-Independent Inhibition Of Pp2Cs By A Subclass Of Pyl Proteins
Mol. Cell V. 42 662 2011
PubMed-ID: 21658606 | Reference-DOI: 10.1016/J.MOLCEL.2011.05.011

Molecule 1 - PROTEIN PHOSPHATASE 2C 16
	Chains	:	A, B
	EC Number	:	3.1.3.16
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	RESIDUES 172- 511
	Gene	:	HAB1
	Mutation	:	YES
	Organism Common	:	THALE-CRESS
	Organism Scientific	:	ARABIDOPSIS THALIANA
	Organism Taxid	:	3702
	Synonym	:	ATPP2C16, ATP2C-HA, PROTEIN HYPERSENSITIVE TO ABA 1, PROTEIN PHOSPHATASE 2C HAB1, PP2C HAB1

Molecule 2 - ABSCISIC ACID RECEPTOR PYL10
	Chains	:	C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	PYL10
	Mutation	:	YES
	Organism Common	:	THALE-CRESS
	Organism Scientific	:	ARABIDOPSIS THALIANA
	Organism Taxid	:	3702
	Synonym	:	ABI1-BINDING PROTEIN 8, PYR1-LIKE PROTEIN 10, REGULATORY COMPONENTS OF ABA RECEPTOR 4

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:		B		D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	MG	2	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:243 , ASP A:432 , ASP A:492 , HOH A:544 , HOH A:681 , HOH A:727	BINDING SITE FOR RESIDUE MG A 512
2	AC2	SOFTWARE	ASP B:243 , ASP B:432 , ASP B:492 , HOH B:673 , HOH B:674 , HOH B:675	BINDING SITE FOR RESIDUE MG B 512

(no "SS Bond" information available for 3RT0)

Asymmetric Unit

No.	Residues
1	Lys A:406	-	Pro A:407
2	Ser B:313	-	Asp B:314
3	Lys B:406	-	Pro B:407

(no "SAP(SNP)/Variant" information available for 3RT0)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PPM_2	PS51746	PPM-type phosphatase domain profile.	P2C16_ARATH	189-501	2	A:189-501 B:189-501
2	PPM_1	PS01032	PPM-type phosphatase domain signature.	P2C16_ARATH	238-246	2	A:238-246 B:238-246

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PPM_2	PS51746	PPM-type phosphatase domain profile.	P2C16_ARATH	189-501	1	A:189-501 -
2	PPM_1	PS01032	PPM-type phosphatase domain signature.	P2C16_ARATH	238-246	1	A:238-246 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PPM_2	PS51746	PPM-type phosphatase domain profile.	P2C16_ARATH	189-501	1	- B:189-501
2	PPM_1	PS01032	PPM-type phosphatase domain signature.	P2C16_ARATH	238-246	1	- B:238-246

(no "Exon" information available for 3RT0)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:328
 aligned with P2C16_ARATH | Q9CAJ0 from UniProtKB/Swiss-Prot  Length:511

    Alignment length:331
                                   189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509 
          P2C16_ARATH   180 SVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQRKFKTR 510
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.....eeeeee........eeeeeeeeeeeee.hhh........---.eeeeeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh....ee......ee.........ee.eeeeee...eeeeeee...eeeeee..eeee........hhhhhhhhhhh...eee...eee.........ee.hhhh.......eeeeee....eeeeeeehhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhh....hhhhhhhhhhhhhhhhhh.....eeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------PPM_2  PDB: A:189-501 UniProt: 189-501                                                                                                                                                                                                                                                                                   --------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------PPM_1    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rt0 A 180 SVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMS---THLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELSKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQRKFKTR 510
                                   189       199       209       219        |-  |    239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509 
                                                                          228 232

Chain B from PDB  Type:PROTEIN  Length:314
 aligned with P2C16_ARATH | Q9CAJ0 from UniProtKB/Swiss-Prot  Length:511

    Alignment length:327
                                   189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       
          P2C16_ARATH   180 SVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQRK 506
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------PP2C-3rt0B01 B:190-494                                                                                                                                                                                                                                                                                           ------------ Pfam domains (1)
           Pfam domains (2) ----------PP2C-3rt0B02 B:190-494                                                                                                                                                                                                                                                                                           ------------ Pfam domains (2)
         Sec.struct. author hhhhh.....eeeeee........eeeeeeeeeeeee.hhh.--------...eeeeeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhh..-----...hhhhhhhhhhhhhhhhhhhhhh....eee..eeeee.........ee.eeeeee...eeeeeee...eeeeee..eeee........hhhhhhhhhhh...eee...eee.........ee.hhhh.......eeeeee....eeeeeeehhhhhh..hhhhhhhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhhhhhh.....eeeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------PPM_2  PDB: B:189-501 UniProt: 189-501                                                                                                                                                                                                                                                                                   ----- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------PPM_1    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rt0 B 180 SVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLM--------SLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDE-----TGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQRK 506
                                   189       199       209       219 |       -|      239       249       259       269  |    279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       
                                                                   221      230                                       272   278

Chain C from PDB  Type:PROTEIN  Length:172
 aligned with PYL10_ARATH | Q8H1R0 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:172
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178  
          PYL10_ARATH     9 VESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVTERLQAESME 180
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh.......eeeeeeeeee..hhhhhhhhhh...hhhhh...eeeeee.........eeeeee.......eeeeeeeeee....eeeeeeeee....eeeeeeeeeeeeee..eeeeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rt0 C   9 VESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQSNLNSLADVTERLQAESME 180
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178

Chain D from PDB  Type:PROTEIN  Length:158
 aligned with PYL10_ARATH | Q8H1R0 from UniProtKB/Swiss-Prot  Length:183

    Alignment length:166
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174      
          PYL10_ARATH    15 KKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVTERLQAESME 180
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----      -Polyketide_cyc2-3rt0D01 D:26-172                                                                                                                   -------- Pfam domains (1)
           Pfam domains (2) ----      -Polyketide_cyc2-3rt0D02 D:26-172                                                                                                                   -------- Pfam domains (2)
         Sec.struct. author ....------.eeeeeeeeee..hhhhhhhhhh...hhhhh...eeeeee.........eeeeee.......eeeeeeeeee....eeeeeeeee.......eeeeeeeee..--..eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rt0 D  15 KKHH------SQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETI--KTGTLAIESFVVDVPEGNTKEETCFFVEALIQSNLNSLADVTERLQAESME 180
                               |     -|       34        44        54        64        74        84        94       104       114       124  |  | 134       144       154       164       174      
                              18     25                                                                                                   127  |                                                  
                                                                                                                                             130

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3RT0)

(no "CATH Domain" information available for 3RT0)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Bet_V_1_like (93)

Family: Polyketide_cyc2 (26)

Arabidopsis thaliana (Mouse-ear cress) (24)

1a	Polyketide_cyc2-3rt0D01	D:26-172
1b	Polyketide_cyc2-3rt0D02	D:26-172

Clan: PP2C (22)

Family: PP2C (13)

Arabidopsis thaliana (Mouse-ear cress) (8)

2a	PP2C-3rt0B01	B:190-494
2b	PP2C-3rt0B02	B:190-494

Asymmetric Unit(hide GO term definitions)

Chain A,B (P2C16_ARATH | Q9CAJ0)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0043169	cation binding	Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004721	phosphoprotein phosphatase activity	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004722	protein serine/threonine phosphatase activity	Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate.
biological process
	GO:0009738	abscisic acid-activated signaling pathway	A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription.
	GO:0006470	protein dephosphorylation	The process of removing one or more phosphoric residues from a protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain C,D (PYL10_ARATH | Q8H1R0)

molecular function
	GO:0010427	abscisic acid binding	Interacting selectively and non-covalently with abscisic acid, plant hormones that regulate aspects of plant growth.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0004864	protein phosphatase inhibitor activity	Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from phosphorylated proteins.
	GO:0004872	receptor activity	Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
biological process
	GO:0009738	abscisic acid-activated signaling pathway	A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription.
	GO:0043086	negative regulation of catalytic activity	Any process that stops or reduces the activity of an enzyme.
	GO:0080163	regulation of protein serine/threonine phosphatase activity	Any process that modulates the frequency, rate or extent of protein serine/threonine phosphatase activity: catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
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	Cis Peptide Bonds
		Lys A:406 - Pro A:407	[ RasMol ]
		Lys B:406 - Pro B:407	[ RasMol ]
		Ser B:313 - Asp B:314	[ RasMol ]

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Description

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Ligands, Modified Residues, Ions (1, 2)

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