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(-) Description

Title :  CUPIN 2 CONSERVED BARREL DOMAIN PROTEIN FROM LEPTOTRICHIA BUCCALIS
 
Authors :  J. Osipiuk, C. Tesar, J. Bearden, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  22 Apr 11  (Deposition) - 11 May 11  (Release) - 11 May 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.07
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Conserved Barrel Domain, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, C. Tesar, J. Bearden, A. Joachimiak
Cupin 2 Conserved Barrel Domain Protein From Leptotrichia Buccalis.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CUPIN 2 CONSERVED BARREL DOMAIN PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LEBU_0116
    Organism Scientific: LEPTOTRICHIA BUCCALIS
    Organism Taxid: 523794
    Strain: C-1013-B

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:27 , SER A:37 , GLU A:102 , HOH A:243 , HOH A:273BINDING SITE FOR RESIDUE ACT A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RNS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3RNS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3RNS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:208
 aligned with C7NCX6_LEPBD | C7NCX6 from UniProtKB/TrEMBL  Length:224

    Alignment length:224
                             1                                                                                                                                                                                                                              
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
         C7NCX6_LEPBD     - -MVKIEVAKPINFNRLITSKEAEVVSMRILNQPNSYISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIENNKKTISNGDFLEITANHNYSIEARDNLKLIEIGEKIGDGNMENKTLKMLESASAFNLAEVVEYQEGKIVSKNLVAKPNLVMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYVDGKPFIVKKGESAVLPANIPHAVEAETENFKMLLILVK 223
               SCOP domains d3rnsa1 A:0-103 automated matches                                                                       --------------------d3rnsa2 A:124-223 automated matches                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_2-3rnsA01 A:153-222                                             - Pfam domains
         Sec.struct. author ..........eehhhhh......eeeeeeee...eeeeeeee....eeee......eeeeeee.eeeeee...eeeee..eeeee.....eeeee...eeeeeeee..----------------..ee.hhhh......eeeeeeeee..eeeeeeee....eeeee....eeeeeeeeeeeeeee..eeeeee..eeeee.....eeee.....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rns A   0 AmVKIEVAKPINFNRLITSKEAEVVSmRILNQPNSYISLFSLAKDEEITAEAmLGNRYYYCFNGNGEIFIENNKKTISNGDFLEITANHNYSIEARDNLKLIEIGEKI----------------SAFNLAEVVEYQEGKIVSKNLVAKPNLVmTImSFWKGESLDPHKAPGDALVTVLDGEGKYYVDGKPFIVKKGESAVLPANIPHAVEAETENFKmLLILVK 223
                             |       9        19      | 29        39        49  |     59        69        79        89        99       | -         -    |  129       139       149  |  | 159       169       179       189       199       209       219    
                             |                       26-MSE                    52-MSE                                                107              124                         152-MSE                                                          217-MSE  
                             1-MSE                                                                                                                                                   155-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RNS)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Cupin (179)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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