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(-) Description

Title :  CRYSTAL STRUCTURE OF AMIDOHYDROLASE PMI1525 (TARGET EFI-500319) FROM PROTEUS MIRABILIS HI4320
 
Authors :  Y. Patskovsky, B. Hillerich, R. D. Seidel, W. D. Zencheck, R. Toro, H. J. F. M. Raushel, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (
Date :  11 Apr 11  (Deposition) - 27 Apr 11  (Release) - 27 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.53
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Hydrolase, Amidohydrolase, Zinc Binding Site, Enzyme Function Initiative, Efi (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Patskovsky, B. Hillerich, R. D. Seidel, W. D. Zencheck, R. Toro, H. J. Imker, F. M. Raushel, J. A. Gerlt, S. C. Almo
Crystal Structure Of Amidohydrolase Pmi1525 From Proteus Mirabilis Hi4320
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE PHOPHOTRIESTERASE
    ChainsA
    EngineeredYES
    GenePMI1525
    Organism ScientificPROTEUS MIRABILIS
    Organism Taxid529507
    StrainHI4320

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 8)

Asymmetric Unit (5, 8)
No.NameCountTypeFull Name
1BEZ1Ligand/IonBENZOIC ACID
2CAC1Ligand/IonCACODYLATE ION
3SO41Ligand/IonSULFATE ION
4UNL3Ligand/IonUNKNOWN LIGAND
5ZN2Ligand/IonZINC ION
Biological Unit 1 (4, 12)
No.NameCountTypeFull Name
1BEZ2Ligand/IonBENZOIC ACID
2CAC2Ligand/IonCACODYLATE ION
3SO42Ligand/IonSULFATE ION
4UNL6Ligand/IonUNKNOWN LIGAND
5ZN-1Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:23 , HIS A:25 , GLU A:166 , ASP A:294 , CAC A:370BINDING SITE FOR RESIDUE ZN A 367
2AC2SOFTWAREGLU A:166 , HIS A:199 , HIS A:229 , CAC A:370BINDING SITE FOR RESIDUE ZN A 368
3AC3SOFTWAREHIS A:199 , HIS A:229 , PHE A:261 , ASP A:294 , CAC A:370 , HOH A:432 , HOH A:633 , HOH A:649 , HOH A:654BINDING SITE FOR RESIDUE BEZ A 369
4AC4SOFTWAREHIS A:23 , HIS A:25 , TYR A:126 , GLU A:166 , HIS A:199 , HIS A:229 , ASP A:294 , PHE A:296 , ZN A:367 , ZN A:368 , BEZ A:369BINDING SITE FOR RESIDUE CAC A 370
5AC5SOFTWAREMET A:1 , LYS A:2 , GLY A:3 , LYS A:14 , ALA A:344 , GLU A:345 , HOH A:388 , HOH A:406 , HOH A:588 , HOH A:719BINDING SITE FOR RESIDUE SO4 A 371

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3RHG)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:165 -Glu A:166

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RHG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RHG)

(-) Exons   (0, 0)

(no "Exon" information available for 3RHG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:363
 aligned with B4EXV8_PROMH | B4EXV8 from UniProtKB/TrEMBL  Length:343

    Alignment length:363
                                                                                                                                                                                                                                                                                                                                                                                343                    
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340  |      -         -   
         B4EXV8_PROMH     1 MKGYIQTVTGPVKKADMGLTLPHEHLFNDLSGVVDEPFYEFSHVLVDKKVSADIQWGLKYDPYCCCDNMDKKPIEDVIFELNNFKELGGKTIVDATGSSSIGRDIRKLKQVAELTGINVVASSGLYIEKFEGKRLADDIDAMAKMIDDELNIGIDGTDIRAGMIGEIGVSPFFTDGEKNSLRAAALAQNNNPYASMNIHMPGWQRRGDEVLDILLTEMGCDPAKISLAHSDPSGKDIDYQCKMLDRGVWLEFDMIGLDISFPKEGAAPSVMDTVEAVATLIERGYGNQIVLSHDVFLKQMWAKNGGNGWGFVPNVFLSLLAQRGIDKTIIDKLCIDNPANLLA--------------------   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -----------PTE-3rhgA01 A:12-343                                                                                                                                                                                                                                                                                                                        -------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.hhh.eeeeee.....hhhhh......hhhhhh....hhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhhh.eeeeee...hhhhh.hhhhhhhhhhhhh.eee.ee...hhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee.....hhhhhhhhhhhhhhhh......eeee......hhhhhhhhhh.....hhh.eee..hhhhh.hhhhhhhhhhh..eeee................hhhhhhhhhhhhhhh.hhh.eee.....hhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rhg A   1 MKGYIQTVTGPVKKADMGLTLPHEHLFNDLSGVVDEPFYEFSHVLVDKKVSADIQWGLKYDPYCCCDNMDKKPIEDVIFELNNFKELGGKTIVDATGSSSIGRDIRKLKQVAELTGINVVASSGLYIEKFEGKRLADDIDAMAKMIDDELNIGIDGTDIRAGMIGEIGVSPFFTDGEKNSLRAAALAQNNNPYASMNIHMPGWQRRGDEVLDILLTEMGCDPAKISLAHSDPSGKDIDYQCKMLDRGVWLEFDMIGLDISFPKEGAAPSVMDTVEAVATLIERGYGNQIVLSHDVFLKQMWAKNGGNGWGFVPNVFLSLLAQRGIDKTIIDKLCIDNPANLLAAENLYFQSHHHHHHWSHPQF 364
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350||     361   
                                                                                                                                                                                                                                                                                                                                                                                        351|           
                                                                                                                                                                                                                                                                                                                                                                                         353           

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RHG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RHG)

(-) Pfam Domains  (1, 1)

Asymmetric Unit

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A   (B4EXV8_PROMH | B4EXV8)
molecular function
    GO:0016788    hydrolase activity, acting on ester bonds    Catalysis of the hydrolysis of any ester bond.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0009056    catabolic process    The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism.

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