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Biological Unit 1 (Jmol Viewer)

Title :   THE VIRULENCE FACTOR PEB4 AND THE PERIPLASMIC PROTEIN CJ1289 ARE TWO STRUCTURALLY-RELATED SURA-LIKE CHAPERONES IN THE HUMAN PATHOGEN CAMPYLOBACTER JEJUNI

Authors :   A. Kale, C. Phansopa, C. Suwannachart, C. J. Craven, J. Rafferty, D. J. K

Date :   07 Apr 11 (Deposition) - 27 Apr 11 (Release) - 27 Apr 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Sura-Like, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Kale, C. Phansopa, C. Suwannachart, C. J. Craven, J. Rafferty, D. J. Kelly
The Virulence Factor Peb4 And The Periplasmic Protein Cj128 Are Two Structurally-Related Sura-Like Chaperones In The Human Pathogen Campylobacter Jejuni
To Be Published
PubMed: search

Molecule 1 - CELL-BINDING FACTOR 2
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	CBF2, PEB4A, CJ0596
	Organism Scientific	:	CAMPYLOBACTER JEJUNI
	Organism Taxid	:	197
	Synonym	:	MAJOR ANTIGEN PEB4A

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3RFW)

(no "Site" information available for 3RFW)

(no "SS Bond" information available for 3RFW)

(no "Cis Peptide Bond" information available for 3RFW)

(no "SAP(SNP)/Variant" information available for 3RFW)

Asymmetric Unit (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PPIC_PPIASE_2	PS50198	PpiC-type peptidyl-prolyl cis-trans isomerase family profile.	CBF2_CAMJE	131-228	1	A:131-228
2	PPIC_PPIASE_1	PS01096	PpiC-type peptidyl-prolyl cis-trans isomerase signature.	CBF2_CAMJE	166-187	1	A:166-187

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PPIC_PPIASE_2	PS50198	PpiC-type peptidyl-prolyl cis-trans isomerase family profile.	CBF2_CAMJE	131-228	2	A:131-228
2	PPIC_PPIASE_1	PS01096	PpiC-type peptidyl-prolyl cis-trans isomerase signature.	CBF2_CAMJE	166-187	2	A:166-187

(no "Exon" information available for 3RFW)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:252
 aligned with CBF2_CAMJE | Q0PAS1 from UniProtKB/Swiss-Prot  Length:273

    Alignment length:252
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271  
           CBF2_CAMJE    22 ATVATVNGKSISDTEVSEFFAPMLRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK 273
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains -----------------------------------------------------------------------------------Rotamase_3-3rfwA01 A:105-230                                                                                                  ------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eeeehhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...ee..eeeeeeeee.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh....hhhhh.eeeee.....hhhhhhhhhhh...ee....eee..eeeeeeeeeee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------PPIC_PPIASE_2  PDB: A:131-228 UniProt: 131-228                                                    --------------------------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------PPIC_PPIASE_1         -------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3rfw A  22 ATVATVNGKSISDTEVSEFFAPMLRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVYQEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK 273
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3RFW)

(no "CATH Domain" information available for 3RFW)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: FKBP (43)

Family: Rotamase_3 (3)

Campylobacter jejuni (1)

Rotamase_3-3rfwA01

A:105-230

Asymmetric Unit(hide GO term definitions)

Chain A (CBF2_CAMJE | Q0PAS1)

molecular function
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
biological process
	GO:0000413	protein peptidyl-prolyl isomerization	The modification of a protein by cis-trans isomerization of a proline residue.

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	Cis Peptide Bonds
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Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	3rfw
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