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(-) Description

Title :  CRYSTAL STRUCTURE OF RHODOTHERMUS MARINUS BAMD
 
Authors :  C. M. Sandoval, S. L. Baker, K. Jansen, S. I. Metzner, M. C. Sousa
Date :  02 Feb 11  (Deposition) - 20 Apr 11  (Release) - 16 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A
Keywords :  Outer Membrane, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Sandoval, S. L. Baker, K. Jansen, S. I. Metzner, M. C. Sousa
Crystal Structure Of Bamd. An Essential Component Of The Beta-Barrel Assembly Machinery Of Gram Negative Bacteria
J. Mol. Biol. 2011
PubMed-ID: 21463635  |  Reference-DOI: 10.1016/J.JMB.2011.03.035

(-) Compounds

Molecule 1 - OUTER MEMBRANE ASSEMBLY LIPOPROTEIN YFIO
    Chains: A
    Engineered: YES
    Fragment: RESIDUES 24-280
    Gene: RMAR_0679
    Organism Common: RHODOTHERMUS OBAMENSIS
    Organism Scientific: RHODOTHERMUS MARINUS
    Organism Taxid: 518766
    Strain: ATCC 43812/DSM 4252/R-10

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3QKY)

(-) Sites  (0, 0)

(no "Site" information available for 3QKY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3QKY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3QKY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3QKY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3QKY)

(-) Exons   (0, 0)

(no "Exon" information available for 3QKY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:251
 aligned with D0MFQ0_RHOM4 | D0MFQ0 from UniProtKB/TrEMBL  Length:280

    Alignment length:251
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279 
         D0MFQ0_RHOM4    30 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDASLAQGQRQN 280
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------TPR_16-3qkyA01 A:38-108                                                ------------------------------------------------------------------------------------------------TPR_6-3qkyA02 A:205-247                    --------------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPR_6-3qkyA03 A:205-247                    --------------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPR_6-3qkyA04 A:205-247                    --------------------------------- Pfam domains (3)
         Sec.struct. author ...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh......hhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3qky A  30 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDASLAQGQRQN 280
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3QKY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QKY)

(-) Pfam Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Clan: TPR (230)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3QKY)

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 Related Entries

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