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(-) Description

Title :  CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION WHICH BELONGS TO PFAM DUF74 FAMILY (PEPE_0654) FROM PEDIOCOCCUS PENTOSACEUS ATCC 25745 AT 2.73 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  31 Jan 11  (Deposition) - 23 Feb 11  (Release) - 20 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.73
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Beta/Alpha-Propeller, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Protein With Unknown Function Which Belongs To Pfam Duf74 Family (Pepe_0654) From Pediococcus Pentosaceus Atcc 25745 At 2. 73 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PEPE_0654
    Organism Scientific: PEDIOCOCCUS PENTOSACEUS
    Organism Taxid: 278197
    Strain: ATCC 25745 / 183-1W

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 15)

Asymmetric/Biological Unit (1, 15)
No.NameCountTypeFull Name
1MSE15Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3QKB)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3QKB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3QKB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3QKB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3QKB)

(-) Exons   (0, 0)

(no "Exon" information available for 3QKB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:94
 aligned with Q03GF5_PEDPA | Q03GF5 from UniProtKB/TrEMBL  Length:92

    Alignment length:94
                               1                                                                                          
                               |     7        17        27        37        47        57        67        77        87    
          Q03GF5_PEDPA    - ---MFITTEGINAGYTIKDVVEATSSLMLASEDIDKYNMFDQLFDEAKQKLKKKADLLEGDGIIGLKYNTEVVEVNGAPKFLVVHGYGTVILID 91
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee........eeeeeeeeeeeeee.hhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeeeee..eeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                  3qkb A -2 FQGmFITTEGINAGYTIKDVVEATSSLmLASEDIDKYNmFDQLFDEAKQKLKKKADLLEGDGIIGLKYNTEVVEVNGAPKFLVVHGYGTVILID 91
                               |     7        17       |27        37        47        57        67        77        87    
                               |                      25-MSE     36-MSE                                                   
                               1-MSE                                                                                      


Chain B from PDB  Type:PROTEIN  Length:93
 aligned with Q03GF5_PEDPA | Q03GF5 from UniProtKB/TrEMBL  Length:92

    Alignment length:93
                              1                                                                                          
                              |      8        18        28        38        48        58        68        78        88   
          Q03GF5_PEDPA    - --MFITTEGINAGYTIKDVVEATSSLMLASEDIDKYNMFDQLFDEAKQKLKKKADLLEGDGIIGLKYNTEVVEVNGAPKFLVVHGYGTVILID 91
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee........eeeeeeeeeeeeee.hhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeeee....eeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                  3qkb B -1 QGmFITTEGINAGYTIKDVVEATSSLmLASEDIDKYNmFDQLFDEAKQKLKKKADLLEGDGIIGLKYNTEVVEVNGAPKFLVVHGYGTVILID 91
                              |      8        18      | 28       |38        48        58        68        78        88   
                              1-MSE                  25-MSE     36-MSE                                                   


Chain C from PDB  Type:PROTEIN  Length:92
 aligned with Q03GF5_PEDPA | Q03GF5 from UniProtKB/TrEMBL  Length:92

    Alignment length:92
                             1                                                                                          
                             |       9        19        29        39        49        59        69        79        89  
          Q03GF5_PEDPA    - -MFITTEGINAGYTIKDVVEATSSLMLASEDIDKYNMFDQLFDEAKQKLKKKADLLEGDGIIGLKYNTEVVEVNGAPKFLVVHGYGTVILID 91
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee........eeeeeeeeeeeeee.hhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeeee....eeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  3qkb C  0 GmFITTEGINAGYTIKDVVEATSSLmLASEDIDKYNmFDQLFDEAKQKLKKKADLLEGDGIIGLKYNTEVVEVNGAPKFLVVHGYGTVILID 91
                             |       9        19     |  29      | 39        49        59        69        79        89  
                             1-MSE                  25-MSE     36-MSE                                                   


Chain D from PDB  Type:PROTEIN  Length:93
 aligned with Q03GF5_PEDPA | Q03GF5 from UniProtKB/TrEMBL  Length:92

    Alignment length:93
                              1                                                                                          
                              |      8        18        28        38        48        58        68        78        88   
          Q03GF5_PEDPA    - --MFITTEGINAGYTIKDVVEATSSLMLASEDIDKYNMFDQLFDEAKQKLKKKADLLEGDGIIGLKYNTEVVEVNGAPKFLVVHGYGTVILID 91
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee........eeeeeeeeeeeeee.hhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeeeee..eeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                  3qkb D -1 QGmFITTEGINAGYTIKDVVEATSSLmLASEDIDKYNmFDQLFDEAKQKLKKKADLLEGDGIIGLKYNTEVVEVNGAPKFLVVHGYGTVILID 91
                              |      8        18      | 28       |38        48        58        68        78        88   
                              1-MSE                  25-MSE     36-MSE                                                   


Chain E from PDB  Type:PROTEIN  Length:92
 aligned with Q03GF5_PEDPA | Q03GF5 from UniProtKB/TrEMBL  Length:92

    Alignment length:92
                             1                                                                                          
                             |       9        19        29        39        49        59        69        79        89  
          Q03GF5_PEDPA    - -MFITTEGINAGYTIKDVVEATSSLMLASEDIDKYNMFDQLFDEAKQKLKKKADLLEGDGIIGLKYNTEVVEVNGAPKFLVVHGYGTVILID 91
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -YbjQ_1-3qkbE01 E:1-90                                                                     - Pfam domains (1)
           Pfam domains (2) -YbjQ_1-3qkbE02 E:1-90                                                                     - Pfam domains (2)
           Pfam domains (3) -YbjQ_1-3qkbE03 E:1-90                                                                     - Pfam domains (3)
           Pfam domains (4) -YbjQ_1-3qkbE04 E:1-90                                                                     - Pfam domains (4)
           Pfam domains (5) -YbjQ_1-3qkbE05 E:1-90                                                                     - Pfam domains (5)
         Sec.struct. author ..ee........eeeeeeeeeeeeee.hhhhh.hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeeee....eeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  3qkb E  0 GmFITTEGINAGYTIKDVVEATSSLmLASEDIDKYNmFDQLFDEAKQKLKKKADLLEGDGIIGLKYNTEVVEVNGAPKFLVVHGYGTVILID 91
                             |       9        19     |  29      | 39        49        59        69        79        89  
                             1-MSE                  25-MSE     36-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3QKB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3QKB)

(-) Pfam Domains  (1, 5)

Asymmetric/Biological Unit
(-)
Clan: YbjQ-like (3)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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