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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF PROTEIN MLL2253 FROM MESORHIZOBIUM LOTI, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET MLR404.
 
Authors :  F. Forouhar, S. Lew, J. Seetharaman, D. Wang, C. Ciccosanti, S. Sahdev, B. Rost, T. B. Acton, R. Xiao, J. K. Everett, G. T. Montelione, J. F. Hunt Northeast Structural Genomics Consortium (Nesg)
Date :  30 Dec 10  (Deposition) - 12 Jan 11  (Release) - 22 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Alpha-Beta Protein, Unknown, Structure Genomics, Unknown Function, Northeast Structural Genomics Consortium, Nesg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Forouhar, S. Lew, J. Seetharaman, D. Wang, C. Ciccosanti, S. Sahdev R. Nair, B. Rost, T. B. Acton, R. Xiao, J. K. Everett, G. T. Montelione, J. F. Hunt, L. Tong
X-Ray Crystal Structure Of Protein Mll2253 From Mesorhizobium Loti, Northeast Structural Genomics Consortiu Target Mlr404.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MLL2253 PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: MESORHIZOBIUM LOTI
    Organism Taxid: 266835
    Tissue: MAFF303099

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 18)

Asymmetric Unit (1, 18)
No.NameCountTypeFull Name
1MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3Q63)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3Q63)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3Q63)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3Q63)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3Q63)

(-) Exons   (0, 0)

(no "Exon" information available for 3Q63)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
 aligned with Q98IT8_RHILO | Q98IT8 from UniProtKB/TrEMBL  Length:143

    Alignment length:132
                                    18        28        38        48        58        68        78        88        98       108       118       128       138  
         Q98IT8_RHILO     9 RTVVVERQISHPPEKLWRALTQPHLIEEWLMKNDFKPAVGHRFNISADWGGVLDCEVLAVEPNKTLSYTWNLAHQDPAFDLRSVVTFTLTPTPTGTHLRMEQSGFRPDQRRAYGGAKMGWPQFFEKLEQLLD 140
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhhhhhhh.ee........eeeee.....eeeeeeeeee...eeeee..............eeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3q63 A   9 RTVVVERQISHPPEKLWRALTQPHLIEEWLmKNDFKPAVGHRFNISADWGGVLDCEVLAVEPNKTLSYTWNLAHQDPAFDLRSVVTFTLTPTPTGTHLRmEQSGFRPDQRRAYGGAKmGWPQFFEKLEQLLD 140
                                    18        28        38|       48        58        68        78        88        98       108       118       128       138  
                                                         39-MSE                                                              108-MSE           126-MSE          


Chain B from PDB  Type:PROTEIN  Length:137
 aligned with Q98IT8_RHILO | Q98IT8 from UniProtKB/TrEMBL  Length:143

    Alignment length:137
                                                                                                                                                                 143 
                                    17        27        37        47        57        67        77        87        97       107       117       127       137     | 
         Q98IT8_RHILO     8 NRTVVVERQISHPPEKLWRALTQPHLIEEWLMKNDFKPAVGHRFNISADWGGVLDCEVLAVEPNKTLSYTWNLAHQDPAFDLRSVVTFTLTPTPTGTHLRMEQSGFRPDQRRAYGGAKMGWPQFFEKLEQLLDRTD-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee..hhhhhhhhhhhhhhhhhhh.ee........eeeee.....eeeeeeeeee...eeeee..............eeeeeeeee..eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q63 B   8 NRTVVVERQISHPPEKLWRALTQPHLIEEWLmKNDFKPAVGHRFNISADWGGVLDCEVLAVEPNKTLSYTWNLAHQDPAFDLRSVVTFTLTPTPTGTHLRmEQSGFRPDQRRAYGGAKmGWPQFFEKLEQLLDRTDL 144
                                    17        27        37 |      47        57        67        77        87        97       107|      117       127       137       
                                                          39-MSE                                                              108-MSE           126-MSE              


Chain C from PDB  Type:PROTEIN  Length:137
 aligned with Q98IT8_RHILO | Q98IT8 from UniProtKB/TrEMBL  Length:143

    Alignment length:137
                                                                                                                                                                 143 
                                    17        27        37        47        57        67        77        87        97       107       117       127       137     | 
         Q98IT8_RHILO     8 NRTVVVERQISHPPEKLWRALTQPHLIEEWLMKNDFKPAVGHRFNISADWGGVLDCEVLAVEPNKTLSYTWNLAHQDPAFDLRSVVTFTLTPTPTGTHLRMEQSGFRPDQRRAYGGAKMGWPQFFEKLEQLLDRTD-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..hhhhhhhhhhhhhhhhhhh...........eeeee.....eeeeeeeeee...eeeeeeee........eeeeeeeeeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q63 C   8 NRTVVVERQISHPPEKLWRALTQPHLIEEWLmKNDFKPAVGHRFNISADWGGVLDCEVLAVEPNKTLSYTWNLAHQDPAFDLRSVVTFTLTPTPTGTHLRmEQSGFRPDQRRAYGGAKmGWPQFFEKLEQLLDRTDL 144
                                    17        27        37 |      47        57        67        77        87        97       107|      117       127       137       
                                                          39-MSE                                                              108-MSE           126-MSE              


Chain D from PDB  Type:PROTEIN  Length:136
 aligned with Q98IT8_RHILO | Q98IT8 from UniProtKB/TrEMBL  Length:143

    Alignment length:136
                                                                                                                                                                143 
                                    18        28        38        48        58        68        78        88        98       108       118       128       138    | 
         Q98IT8_RHILO     9 RTVVVERQISHPPEKLWRALTQPHLIEEWLMKNDFKPAVGHRFNISADWGGVLDCEVLAVEPNKTLSYTWNLAHQDPAFDLRSVVTFTLTPTPTGTHLRMEQSGFRPDQRRAYGGAKMGWPQFFEKLEQLLDRTD-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhhhhhhh.ee........eeeee.....eeeeeeeeee...eeeeeeee........eeeeeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q63 D   9 RTVVVERQISHPPEKLWRALTQPHLIEEWLmKNDFKPAVGHRFNISADWGGVLDCEVLAVEPNKTLSYTWNLAHQDPAFDLRSVVTFTLTPTPTGTHLRmEQSGFRPDQRRAYGGAKmGWPQFFEKLEQLLDRTDL 144
                                    18        28        38|       48        58        68        78        88        98       108       118       128       138      
                                                         39-MSE                                                              108-MSE           126-MSE              


Chain E from PDB  Type:PROTEIN  Length:135
 aligned with Q98IT8_RHILO | Q98IT8 from UniProtKB/TrEMBL  Length:143

    Alignment length:135
                                    16        26        36        46        56        66        76        86        96       106       116       126       136     
         Q98IT8_RHILO     7 ENRTVVVERQISHPPEKLWRALTQPHLIEEWLMKNDFKPAVGHRFNISADWGGVLDCEVLAVEPNKTLSYTWNLAHQDPAFDLRSVVTFTLTPTPTGTHLRMEQSGFRPDQRRAYGGAKMGWPQFFEKLEQLLDR 141
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeee..hhhhhhhhhhhhhhhhhhh.ee........eeeee.....eeeeeeeeee...eeeee..............eeeeeeeee..eeeee..eeee...hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q63 E   7 ENRTVVVERQISHPPEKLWRALTQPHLIEEWLmKNDFKPAVGHRFNISADWGGVLDCEVLAVEPNKTLSYTWNLAHQDPAFDLRSVVTFTLTPTPTGTHLRmEQSGFRPDQRRAYGGAKmGWPQFFEKLEQLLDR 141
                                    16        26        36  |     46        56        66        76        86        96       106 |     116       126       136     
                                                           39-MSE                                                              108-MSE           126-MSE           


Chain F from PDB  Type:PROTEIN  Length:139
 aligned with Q98IT8_RHILO | Q98IT8 from UniProtKB/TrEMBL  Length:143

    Alignment length:139
                                                                                                                                                                   143 
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       | 
         Q98IT8_RHILO     6 TENRTVVVERQISHPPEKLWRALTQPHLIEEWLMKNDFKPAVGHRFNISADWGGVLDCEVLAVEPNKTLSYTWNLAHQDPAFDLRSVVTFTLTPTPTGTHLRMEQSGFRPDQRRAYGGAKMGWPQFFEKLEQLLDRTD-   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------AHSA1-3q63F01 F:18-140                                                                                                     ---- Pfam domains (1)
           Pfam domains (2) ------------AHSA1-3q63F02 F:18-140                                                                                                     ---- Pfam domains (2)
           Pfam domains (3) ------------AHSA1-3q63F03 F:18-140                                                                                                     ---- Pfam domains (3)
           Pfam domains (4) ------------AHSA1-3q63F04 F:18-140                                                                                                     ---- Pfam domains (4)
           Pfam domains (5) ------------AHSA1-3q63F05 F:18-140                                                                                                     ---- Pfam domains (5)
           Pfam domains (6) ------------AHSA1-3q63F06 F:18-140                                                                                                     ---- Pfam domains (6)
         Sec.struct. author ...eeeeeeeee..hhhhhhhhhhhhhhhhhhh...........eeeee.....eeeeeeeeee...eeeeeeee........eeeeeeeeeeee..eeeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q63 F   6 TENRTVVVERQISHPPEKLWRALTQPHLIEEWLmKNDFKPAVGHRFNISADWGGVLDCEVLAVEPNKTLSYTWNLAHQDPAFDLRSVVTFTLTPTPTGTHLRmEQSGFRPDQRRAYGGAKmGWPQFFEKLEQLLDRTDL 144
                                    15        25        35   |    45        55        65        75        85        95       105  |    115       125|      135         
                                                            39-MSE                                                              108-MSE           126-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3Q63)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3Q63)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: Bet_V_1_like (93)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q98IT8_RHILO | Q98IT8)
biological process
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

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