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(-) Description

Title :  CRYSTAL STRUCTURE OF VIRULENT ALLELE ROP5B PSEUDOKINASE DOMAIN BOUND TO ATP
 
Authors :  M. L. Reese, J. C. Boothroyd
Date :  30 Dec 10  (Deposition) - 23 Feb 11  (Release) - 22 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.72
Chains :  Asym./Biol. Unit :  A
Keywords :  Pseudokinase, Toxoplasma, Transferase, 551. M00238, Rop5 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. L. Reese, J. C. Boothroyd
A Conserved Non-Canonical Motif In The Pseudoactive Site Of The Rop5 Pseudokinase Domain Mediates Its Effect On Toxoplasma Virulence.
J. Biol. Chem. V. 286 29366 2011
PubMed-ID: 21708941  |  Reference-DOI: 10.1074/JBC.M111.253435

(-) Compounds

Molecule 1 - ROP5B
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: PSEUDOKINASE DOMAIN
    Gene: ROP5B;TGGT1_042710
    Organism Scientific: TOXOPLASMA GONDII
    Organism Taxid: 5811
    Strain: RH

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION
3MLI1Ligand/IonMALONATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:241 , GLY A:243 , ASP A:244 , ARG A:245 , SER A:246 , VAL A:248 , ALA A:261 , LYS A:263 , MET A:337 , PRO A:338 , ALA A:340 , ASP A:343 , ASP A:393 , PHE A:396 , MG A:602 , MG A:603 , HOH A:608 , HOH A:610 , HOH A:611 , HOH A:612 , HOH A:615 , HOH A:618 , HOH A:627 , HOH A:633 , HOH A:644 , HOH A:649 , HOH A:782BINDING SITE FOR RESIDUE ATP A 600
2AC2SOFTWARELYS A:263 , PHE A:265 , LEU A:335 , ASP A:407 , HOH A:605 , HOH A:611 , HOH A:620 , HOH A:625 , HOH A:834BINDING SITE FOR RESIDUE MLI A 601
3AC3SOFTWAREASP A:407 , ATP A:600 , HOH A:608 , HOH A:611 , HOH A:612 , HOH A:644BINDING SITE FOR RESIDUE MG A 602
4AC4SOFTWAREASP A:393 , ATP A:600 , HOH A:610 , HOH A:615BINDING SITE FOR RESIDUE MG A 603

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:458 -A:492

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala A:176 -Gly A:177
2Ser A:322 -Pro A:323

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3Q60)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3Q60)

(-) Exons   (0, 0)

(no "Exon" information available for 3Q60)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:350
 aligned with F2YGR7_TOXGO | F2YGR7 from UniProtKB/TrEMBL  Length:549

    Alignment length:363
                                   185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535   
         F2YGR7_TOXGO   176 AGDSFMRDLLKREEELIGYCREEALKEPAAMVEAVTATVWPQNAETTVDSLLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQNEISSSLS 538
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....eeeeee.....eeeeeeeeeeee...eeeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhhhhhh----------......eeeee............---..eeeeeeee....eehhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.eee...hhh.eee.....eee.hhh.eee...eee.hhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhh....................................hhhhhhhhhhhh........hhhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q60 A 176 AGDSFMRDLLKREEELIGYCREEALKEPAAMVEAVTATVWPQNAETTVDSLLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG----------RLLLPSDAVAVQSQPPFAQLSPG---YAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQNEISSSLS 538
                                   185       195       205       215       225       235       245       255       265       275       285     |   -      |305       315        |-  |    335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535   
                                                                                                                                             291        302                   324 328
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3Q60)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3Q60)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3Q60)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (F2YGR7_TOXGO | F2YGR7)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
biological process
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.

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    Ala A:176 - Gly A:177   [ RasMol ]  
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  3q60
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        F2YGR7_TOXGO | F2YGR7: 3q5z 4lv5

(-) Related Entries Specified in the PDB File

3q5z SAME PROTEIN, APO FORM