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(-) Description

Title :  CRYSTAL STRUCTURE OF VIRULENT ALLELE ROP5B PSEUDOKINASE DOMAIN
 
Authors :  M. L. Reese, J. C. Boothroyd
Date :  30 Dec 10  (Deposition) - 23 Feb 11  (Release) - 22 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Pseudokinase, Toxoplasma, Transferase, 551. M00238, Rop5 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. L. Reese, J. C. Boothroyd
A Conserved Non-Canonical Motif In The Pseudoactive Site Of The Rop5 Pseudokinase Domain Mediates Its Effect On Toxoplasma Virulence.
J. Biol. Chem. V. 286 29366 2011
PubMed-ID: 21708941  |  Reference-DOI: 10.1074/JBC.M111.253435

(-) Compounds

Molecule 1 - ROP5B
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: PSEUDOKINASE DOMAIN
    Gene: ROP5B;TGGT1_042710
    Organism Scientific: TOXOPLASMA GONDII
    Organism Taxid: 5811
    Strain: RH

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:263 , PHE A:396 , GLY A:406 , ASP A:407 , EDO A:602 , HOH A:639BINDING SITE FOR RESIDUE EDO A 600
2AC2SOFTWAREPRO A:338 , ALA A:340 , HOH A:641BINDING SITE FOR RESIDUE EDO A 601
3AC3SOFTWARELEU A:304 , PRO A:306 , GLY A:406 , ASP A:407 , VAL A:408 , EDO A:600 , HOH A:651BINDING SITE FOR RESIDUE EDO A 602
4AC4SOFTWARECYS A:195 , GLU A:198 , ARG A:278BINDING SITE FOR RESIDUE EDO A 603

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:458 -A:492

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:176 -Gly A:177

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3Q5Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3Q5Z)

(-) Exons   (0, 0)

(no "Exon" information available for 3Q5Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:336
 aligned with F2YGR7_TOXGO | F2YGR7 from UniProtKB/TrEMBL  Length:549

    Alignment length:361
                                   185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535 
         F2YGR7_TOXGO   176 AGDSFMRDLLKREEELIGYCREEALKEPAAMVEAVTATVWPQNAETTVDSLLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQNEISSS 536
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh....eeeeee.....eeeeeeeeeeeee..eeeeeeee....eeeeeeeee.----hhhhhhhhhhhhhhhhhhh----------.......eeeee.--......------..eeeeeeee....eehhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.eee...hhh.eee.....eee.hhh.eee...eehhhhhhhhhhhhhhh---.ee.hhhhhhhhhhhhhhhhhhh....................................hhhhhhhhhhhh..hhhhh.hhhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3q5z A 176 AGDSFMRDLLKREEELIGYCREEALKEPAAMVEAVTATVWPQNAETTVDSLLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTM----SRSELERLHEATFAAARLL----------RRLLLPSDAVAVQ--PPFAQL------YAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFL---TATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQNEISSS 536
                                   185       195       205       215       225       235       245       255       265 |    |275       285    |    -     | 305       | -|    |   -  |    335       345       355       365       375       385       395       405       415       425       | - |     445       455       465       475       485       495       505       515       525       535 
                                                                                                                     267  272               290        301         313  |  321    328                                                                                                      433 437                                                                                                   
                                                                                                                                                                      316
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3Q5Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3Q5Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3Q5Z)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (F2YGR7_TOXGO | F2YGR7)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
biological process
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.

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  Cis Peptide Bonds
    Ala A:176 - Gly A:177   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        F2YGR7_TOXGO | F2YGR7: 3q60 4lv5

(-) Related Entries Specified in the PDB File

3q60 SAME PROTEIN, ATP BOUND