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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A POSSIBLE MEMBER OF GH105 FAMILY FROM KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE MGH 78578
 
Authors :  K. Tan, C. Hatzos-Skintges, J. Bearden, A. Joachimiak, Midwest Cente Structural Genomics (Mcsg)
Date :  17 Nov 10  (Deposition) - 29 Dec 10  (Release) - 08 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Alpha/Alpha Toroid, Cytoplasmic, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, C. Hatzos-Skintges, J. Bearden, A. Joachimiak
The Crystal Structure Of A Possible Member Of Gh105 Family From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE CYTOPLASMIC PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: KPN78578_23540, KPN_02389
    Organism Scientific: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE
    Organism Taxid: 272620
    Strain: MGH 78578
    Synonym: GLYCOSYL HYDROLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 25)

Asymmetric/Biological Unit (3, 25)
No.NameCountTypeFull Name
1FMT8Ligand/IonFORMIC ACID
2IMD1Ligand/IonIMIDAZOLE
3MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:35 , LYS A:58 , TRP A:60 , THR A:66 , HIS A:67 , PRO A:361 , HOH A:699BINDING SITE FOR RESIDUE IMD A 380
2AC2SOFTWAREARG A:256 , HOH A:404 , HOH A:716BINDING SITE FOR RESIDUE FMT A 381
3AC3SOFTWAREGLN A:79 , TYR A:118BINDING SITE FOR RESIDUE FMT A 382
4AC4SOFTWAREGLU A:190BINDING SITE FOR RESIDUE FMT A 383
5AC5SOFTWARETRP A:4 , GLU A:158 , HOH A:443BINDING SITE FOR RESIDUE FMT A 384
6AC6SOFTWAREGLY A:124 , MSE A:126 , HOH A:723BINDING SITE FOR RESIDUE FMT A 385
7AC7SOFTWAREGLY A:101BINDING SITE FOR RESIDUE FMT A 386
8AC8SOFTWAREARG A:29 , GLN A:33 , GLU A:85BINDING SITE FOR RESIDUE FMT A 387
9AC9SOFTWAREGLY A:68 , ALA A:111 , MSE A:170BINDING SITE FOR RESIDUE FMT A 388

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3PMM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3PMM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3PMM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3PMM)

(-) Exons   (0, 0)

(no "Exon" information available for 3PMM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:381
 aligned with A6TB44_KLEP7 | A6TB44 from UniProtKB/TrEMBL  Length:379

    Alignment length:381
                              1                                                                                                                                                                                                                                                                                                                                                                                          
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378 
         A6TB44_KLEP7     - --MKVWPVKHSPLLRQPERFIARSELQALIRNVTQNLVNIKDESGQFLLRLDDGRVIDTKGWAGWEWTHGVGLYGIYQYYQQTGDIEMRDIIDRWFADRFAEGATTKNVNTMAPFLTLAYRFEETGRMAYLPWLESWAEWAMHEMPRTEQGGMQHMTLAEENHQQMWDDTLMMTVLPLAKIGKLLNRPQYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWARGNSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGELLQTSFGTGMGSDLDFYRQIPLTSMPYGQAMAILCLTEYLRKYF 379
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------Glyco_hydro_88-3pmmA01 A:37-378                                                                                                                                                                                                                                                                                                                       - Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhhhhhh........ee.....ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh............eee.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.........eee...........hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.....ee.........eehhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..................hhhhhhh.....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pmm A  -1 NAmKVWPVKHSPLLRQPERFIARSELQALIRNVTQNLVNIKDESGQFLLRLDDGRVIDTKGWAGWEWTHGVGLYGIYQYYQQTGDIEmRDIIDRWFADRFAEGATTKNVNTmAPFLTLAYRFEETGRmAYLPWLESWAEWAmHEmPRTEQGGmQHmTLAEENHQQmWDDTLmmTVLPLAKIGKLLNRPQYVEEATYQFLLHVQNLmDRETGLWFHGWNYEGRHNFARARWARGNSWLTmVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGELLQTSFGTGmGSDLDFYRQIPLTSmPYGQAmAILCLTEYLRKYF 379
                              |      8        18        28        38        48        58        68        78       |88        98       108 |     118       128       138 |  |  148  |  | 158     | 168 ||    178       188       198     | 208       218       228       238       248       258       268       278       288       298       308       318       328       338      |348       358 |     368       378 
                              |                                                                                   86-MSE                 110-MSE         126-MSE       140-MSE    151-MSE      164-MSE ||                              204-MSE                          237-MSE                                                                                                     345-MSE        360-MSE |             
                              1-MSE                                                                                                                                       143-MSE    154-MSE         170-MSE                                                                                                                                                                                             366-MSE         
                                                                                                                                                                                                      171-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3PMM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3PMM)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: 6_Hairpin (120)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (A6TB44_KLEP7 | A6TB44)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

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