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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE DEHYDROGENASE (RPA1076) FROM RHODOPSEUDOMONAS PALUSTRIS CGA009 AT 2.57 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  16 Nov 10  (Deposition) - 15 Dec 10  (Release) - 20 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.57
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Putative D-2-Hydroxyglutarate Dehydrogenase, Putative D-Lactate Dehydrogenase, Fad-Binding/Transporter-Associated Domain-Like Fold, Ferredoxin-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Dehydrogenase (Rpa1076) Fro Rhodopseudomonas Palustris Cga009 At 2. 57 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE OXIDOREDUCTASE
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RPA1076
    Organism Scientific: RHODOPSEUDOMONAS PALUSTRIS
    Organism Taxid: 1076
    Synonym: PUTATIVE DEHYDROGENASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 66)

Asymmetric Unit (4, 66)
No.NameCountTypeFull Name
1FAD6Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2MSE36Mod. Amino AcidSELENOMETHIONINE
3PO418Ligand/IonPHOSPHATE ION
4UNL6Ligand/IonUNKNOWN LIGAND
Biological Unit 1 (4, 22)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2MSE12Mod. Amino AcidSELENOMETHIONINE
3PO46Ligand/IonPHOSPHATE ION
4UNL2Ligand/IonUNKNOWN LIGAND
Biological Unit 2 (4, 22)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2MSE12Mod. Amino AcidSELENOMETHIONINE
3PO46Ligand/IonPHOSPHATE ION
4UNL2Ligand/IonUNKNOWN LIGAND
Biological Unit 3 (4, 22)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2MSE12Mod. Amino AcidSELENOMETHIONINE
3PO46Ligand/IonPHOSPHATE ION
4UNL2Ligand/IonUNKNOWN LIGAND

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:79 , GLN A:80 , GLY A:81 , GLY A:82 , ASN A:83 , THR A:84 , GLY A:85 , LEU A:86 , GLY A:89 , GLN A:90 , LEU A:101 , ALA A:121 , LEU A:143 , GLY A:144 , ALA A:145 , CYS A:149 , THR A:150 , GLY A:153 , ASN A:154 , SER A:156 , THR A:157 , ALA A:159 , GLY A:160 , GLU A:210 , GLY A:211 , GLY A:214 , ILE A:215 , ILE A:216 , GLU A:433 , ASN A:470 , HOH A:533 , HOH A:632 , HOH A:686 , HOH A:979BINDING SITE FOR RESIDUE FAD A 476
02AC2SOFTWARETHR A:60 , ARG A:108 , GLU A:178 , HOH A:849 , HOH A:1414BINDING SITE FOR RESIDUE PO4 A 478
03AC3SOFTWARELYS A:352 , HIS A:353 , ASP A:354 , HIS A:434 , LYS A:440BINDING SITE FOR RESIDUE PO4 A 484
04AC4SOFTWARESER A:341 , GLN A:344 , LYS A:352 , PHE A:385 , HIS A:394 , ASN A:396BINDING SITE FOR RESIDUE PO4 A 490
05AC5SOFTWAREGLU B:43 , PRO B:79 , GLN B:80 , GLY B:81 , GLY B:82 , ASN B:83 , THR B:84 , GLY B:85 , GLY B:89 , GLN B:90 , LEU B:101 , ALA B:121 , ALA B:145 , CYS B:149 , THR B:150 , GLY B:152 , GLY B:153 , ASN B:154 , SER B:156 , THR B:157 , ALA B:159 , GLY B:160 , GLU B:210 , GLY B:211 , GLY B:214 , ILE B:216 , GLU B:433 , ASN B:470 , HOH B:523 , HOH B:542 , HOH B:766 , HOH B:810BINDING SITE FOR RESIDUE FAD B 476
06AC6SOFTWARETHR B:60 , ARG B:108 , GLU B:178 , HOH B:1130 , HOH B:1172BINDING SITE FOR RESIDUE PO4 B 479
07AC7SOFTWAREASP B:354 , HIS B:434 , LYS B:440BINDING SITE FOR RESIDUE PO4 B 485
08AC8SOFTWARESER B:341 , GLN B:344 , LYS B:352 , PHE B:385 , ASN B:396BINDING SITE FOR RESIDUE PO4 B 491
09AC9SOFTWAREPRO C:79 , GLN C:80 , GLY C:81 , GLY C:82 , ASN C:83 , THR C:84 , GLY C:85 , LEU C:86 , GLY C:89 , GLN C:90 , LEU C:101 , LEU C:143 , GLY C:144 , ALA C:145 , CYS C:149 , THR C:150 , GLY C:152 , GLY C:153 , ASN C:154 , SER C:156 , THR C:157 , ALA C:159 , GLY C:160 , GLU C:210 , GLY C:211 , GLY C:214 , ILE C:216 , GLU C:433 , ASN C:470 , HOH C:760 , HOH C:785 , HOH C:1195 , HOH C:1230BINDING SITE FOR RESIDUE FAD C 476
10BC1SOFTWARETHR C:60 , ARG C:108 , GLU C:178BINDING SITE FOR RESIDUE PO4 C 480
11BC2SOFTWARELYS C:352 , ASP C:354 , HIS C:434 , LYS C:440BINDING SITE FOR RESIDUE PO4 C 486
12BC3SOFTWARESER C:341 , GLN C:344 , LYS C:352 , PHE C:385 , ASN C:396BINDING SITE FOR RESIDUE PO4 C 492
13BC4SOFTWAREPRO D:79 , GLN D:80 , GLY D:81 , GLY D:82 , ASN D:83 , THR D:84 , GLY D:85 , GLY D:89 , GLN D:90 , LEU D:101 , ALA D:121 , LEU D:143 , GLY D:144 , ALA D:145 , CYS D:149 , THR D:150 , GLY D:152 , GLY D:153 , ASN D:154 , SER D:156 , THR D:157 , ALA D:159 , GLY D:160 , GLU D:210 , GLY D:211 , GLY D:214 , ILE D:216 , GLU D:433 , ASN D:470 , HOH D:521 , HOH D:629 , HOH D:692BINDING SITE FOR RESIDUE FAD D 476
14BC5SOFTWARETHR D:60 , ARG D:108 , GLU D:178 , HOH D:696 , HOH D:1294 , HOH D:1300BINDING SITE FOR RESIDUE PO4 D 481
15BC6SOFTWARELYS D:352 , HIS D:353 , ASP D:354 , HIS D:434 , LYS D:440 , HOH D:878BINDING SITE FOR RESIDUE PO4 D 487
16BC7SOFTWARESER D:341 , GLN D:344 , LYS D:352 , PHE D:385 , HIS D:394 , ASN D:396BINDING SITE FOR RESIDUE PO4 D 493
17BC8SOFTWAREPRO E:79 , GLN E:80 , GLY E:81 , GLY E:82 , ASN E:83 , THR E:84 , GLY E:85 , LEU E:86 , GLY E:89 , GLN E:90 , LEU E:101 , ALA E:121 , LEU E:143 , GLY E:144 , ALA E:145 , CYS E:149 , THR E:150 , GLY E:152 , GLY E:153 , ASN E:154 , SER E:156 , THR E:157 , ALA E:159 , GLY E:160 , GLU E:210 , GLY E:211 , GLY E:214 , ILE E:215 , ILE E:216 , GLU E:433 , ASN E:470 , HOH E:562 , HOH E:573 , HOH E:601BINDING SITE FOR RESIDUE FAD E 476
18BC9SOFTWARETHR E:60 , ARG E:108 , GLU E:178BINDING SITE FOR RESIDUE PO4 E 482
19CC1SOFTWAREHIS E:353 , ASP E:354 , HIS E:434 , LYS E:440BINDING SITE FOR RESIDUE PO4 E 488
20CC2SOFTWARESER E:341 , GLN E:344 , LYS E:352 , PHE E:385 , HIS E:394 , ASN E:396BINDING SITE FOR RESIDUE PO4 E 494
21CC3SOFTWAREPRO F:79 , GLN F:80 , GLY F:81 , GLY F:82 , ASN F:83 , THR F:84 , GLY F:85 , GLY F:89 , GLN F:90 , LEU F:101 , ALA F:121 , LEU F:143 , GLY F:144 , ALA F:145 , CYS F:149 , THR F:150 , GLY F:153 , ASN F:154 , SER F:156 , THR F:157 , ALA F:159 , GLY F:160 , GLU F:210 , GLY F:211 , GLY F:214 , ILE F:215 , ILE F:216 , GLU F:433 , ASN F:470 , HOH F:569 , HOH F:775 , HOH F:1413BINDING SITE FOR RESIDUE FAD F 476
22CC4SOFTWARETHR F:60 , ARG F:108 , GLU F:178 , HOH F:1017 , HOH F:1270BINDING SITE FOR RESIDUE PO4 F 483
23CC5SOFTWARELYS F:352 , ASP F:354 , HIS F:434 , LYS F:440BINDING SITE FOR RESIDUE PO4 F 489
24CC6SOFTWARESER F:341 , GLN F:344 , LYS F:352 , PHE F:385 , ASN F:396BINDING SITE FOR RESIDUE PO4 F 495

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3PM9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3PM9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3PM9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3PM9)

(-) Exons   (0, 0)

(no "Exon" information available for 3PM9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:465
 aligned with Q6NAV4_RHOPA | Q6NAV4 from UniProtKB/TrEMBL  Length:475

    Alignment length:465
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
         Q6NAV4_RHOPA    11 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV 475
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...ee.hhhhhhhhhh............ee...hhhhhhhhhhhhhhhh..eeee................eeee......eeeee....eeeee...hhhhhhhhhhhh.ee...........hhhhhhhhh....hhhhhhhhhhheeeeeee.....eee.............hhhhhh.......eeeeeeee.ee...eeeeeeeee.hhhhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhhhh...........eeeeeeeee...hhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhhhhhh.ee..eee.hhhhhhhhhhhhhhhhhhhh...eeeeeee....eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pm9 A  11 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRmDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDmALGVEVVLADGRVmNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVmKRDELAEVKDKTAIELmRSIKALLDPHGImNPGKVV 475
                                    20        30        40        50        60        70        80        90       100   |   110       120       130       140       150       160       170  |    180      |190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450     | 460       470     
                                                                                                                       104-MSE                                                              173-MSE       187-MSE                                                                                                                                                                                                                                                     439-MSE          456-MSE      469-MSE  


Chain B from PDB  Type:PROTEIN  Length:465
 aligned with Q6NAV4_RHOPA | Q6NAV4 from UniProtKB/TrEMBL  Length:475

    Alignment length:465
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
         Q6NAV4_RHOPA    11 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV 475
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...ee.hhhhhh................ee...hhhhhhhhhhhhhhhh..eeee................eeee......eeeee....eeeee...hhhhhhhhhhhh.ee...........hhhhhhhhh....hhhhhhhhhhheeeeeee.....eee.............hhhhhh.......eeeeeeee.ee...eeeeeeeee.hhhhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhhhhh..........eeeeeeeee...hhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhhhhhh.ee..eee.hhhhhhhhhhhhhhhhhhhh...eeeeeee....eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pm9 B  11 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRmDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDmALGVEVVLADGRVmNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVmKRDELAEVKDKTAIELmRSIKALLDPHGImNPGKVV 475
                                    20        30        40        50        60        70        80        90       100   |   110       120       130       140       150       160       170  |    180      |190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450     | 460       470     
                                                                                                                       104-MSE                                                              173-MSE       187-MSE                                                                                                                                                                                                                                                     439-MSE          456-MSE      469-MSE  


Chain C from PDB  Type:PROTEIN  Length:465
 aligned with Q6NAV4_RHOPA | Q6NAV4 from UniProtKB/TrEMBL  Length:475

    Alignment length:465
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
         Q6NAV4_RHOPA    11 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV 475
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...ee.hhhhhhhhhh...........eee...hhhhhhhhhhhhhhhh..eeee................eeee......eeeee....eeeee...hhhhhhhhhhhh.ee...........hhhhhhhhh....hhhhhhhhhhheeeeeee.....eee.............hhhhhh.......eeeeeeee.ee...eeeeeeeee.hhhhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhhhh...........eeeeeeeee...hhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhh...eeeeeee....eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pm9 C  11 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRmDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDmALGVEVVLADGRVmNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVmKRDELAEVKDKTAIELmRSIKALLDPHGImNPGKVV 475
                                    20        30        40        50        60        70        80        90       100   |   110       120       130       140       150       160       170  |    180      |190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450     | 460       470     
                                                                                                                       104-MSE                                                              173-MSE       187-MSE                                                                                                                                                                                                                                                     439-MSE          456-MSE      469-MSE  


Chain D from PDB  Type:PROTEIN  Length:465
 aligned with Q6NAV4_RHOPA | Q6NAV4 from UniProtKB/TrEMBL  Length:475

    Alignment length:465
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
         Q6NAV4_RHOPA    11 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV 475
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...ee.hhhhhh................ee...hhhhhhhhhhhhhhh...eeee................eeee......eeeee....eeeee...hhhhhhhhhhhh.ee...........hhhhhhhhh....hhhhhhhhhhheeeeeee.....eee.............hhhhhh.......eeeeeeee.ee...eeeeeeeee.hhhhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhhhhh..........eeeeeeeee...hhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhhhhhh.ee..eee.hhhhhhhhhhhhhhhhhhhh...eeeeeee....eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pm9 D  11 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRmDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDmALGVEVVLADGRVmNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVmKRDELAEVKDKTAIELmRSIKALLDPHGImNPGKVV 475
                                    20        30        40        50        60        70        80        90       100   |   110       120       130       140       150       160       170  |    180      |190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450     | 460       470     
                                                                                                                       104-MSE                                                              173-MSE       187-MSE                                                                                                                                                                                                                                                     439-MSE          456-MSE      469-MSE  


Chain E from PDB  Type:PROTEIN  Length:465
 aligned with Q6NAV4_RHOPA | Q6NAV4 from UniProtKB/TrEMBL  Length:475

    Alignment length:465
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
         Q6NAV4_RHOPA    11 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV 475
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...ee.hhhhhhhhhh...........eee...hhhhhhhhhhhhhhhh..eeee................eeee......eeeee....eeeee...hhhhhhhhhhhh.ee...........hhhhhhhhh....hhhhhhhhhhheeeeeee.....eee.............hhhhhh.......eeeeeeee.ee...eeeeeeeee.hhhhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhhhh...........eeeeeeeee...hhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhh.hhhhhhhh.ee..eee.hhhhhhhhhhhhhhhhhhhh...eeeeeee....eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pm9 E  11 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRmDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDmALGVEVVLADGRVmNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVmKRDELAEVKDKTAIELmRSIKALLDPHGImNPGKVV 475
                                    20        30        40        50        60        70        80        90       100   |   110       120       130       140       150       160       170  |    180      |190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450     | 460       470     
                                                                                                                       104-MSE                                                              173-MSE       187-MSE                                                                                                                                                                                                                                                     439-MSE          456-MSE      469-MSE  


Chain F from PDB  Type:PROTEIN  Length:465
 aligned with Q6NAV4_RHOPA | Q6NAV4 from UniProtKB/TrEMBL  Length:475

    Alignment length:465
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
         Q6NAV4_RHOPA    11 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV 475
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------------------FAD_binding_4-3pm9F07 F:51-189                                                                                                             ------------------------------------FAD-oxidase_C-3pm9F01 F:226-474                                                                                                                                                                                                                          - Pfam domains (1)
           Pfam domains (2) ----------------------------------------FAD_binding_4-3pm9F08 F:51-189                                                                                                             ------------------------------------FAD-oxidase_C-3pm9F02 F:226-474                                                                                                                                                                                                                          - Pfam domains (2)
           Pfam domains (3) ----------------------------------------FAD_binding_4-3pm9F09 F:51-189                                                                                                             ------------------------------------FAD-oxidase_C-3pm9F03 F:226-474                                                                                                                                                                                                                          - Pfam domains (3)
           Pfam domains (4) ----------------------------------------FAD_binding_4-3pm9F10 F:51-189                                                                                                             ------------------------------------FAD-oxidase_C-3pm9F04 F:226-474                                                                                                                                                                                                                          - Pfam domains (4)
           Pfam domains (5) ----------------------------------------FAD_binding_4-3pm9F11 F:51-189                                                                                                             ------------------------------------FAD-oxidase_C-3pm9F05 F:226-474                                                                                                                                                                                                                          - Pfam domains (5)
           Pfam domains (6) ----------------------------------------FAD_binding_4-3pm9F12 F:51-189                                                                                                             ------------------------------------FAD-oxidase_C-3pm9F06 F:226-474                                                                                                                                                                                                                          - Pfam domains (6)
         Sec.struct. author ..hhhhhhhhhhhhh...ee.hhhhhhhhhh............ee...hhhhhhhhhhhhhhhh..eeee................eeee......eeeee....eeeee...hhhhhhhhhhhh.ee...........hhhhhhhhh....hhhhhhhhhhheeeeeee.....eee.............hhhhhh.......eeeeeeee.ee...eeeeeeeee.hhhhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhhhhh..........eeeeeeeee...hhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhhhhhhhhhhhhhhhhhhh...eeeeeee....eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pm9 F  11 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQTPHNGEVVISLKRmDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLARDmALGVEVVLADGRVmNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQGEAAGNLTSFELIAETPLDFSVRHANNRDPLEARYPWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPAQKPEGGSIKHDISVPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGNIHYNVSQPVGADKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVmKRDELAEVKDKTAIELmRSIKALLDPHGImNPGKVV 475
                                    20        30        40        50        60        70        80        90       100   |   110       120       130       140       150       160       170  |    180      |190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450     | 460       470     
                                                                                                                       104-MSE                                                              173-MSE       187-MSE                                                                                                                                                                                                                                                     439-MSE          456-MSE      469-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3PM9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3PM9)

(-) Pfam Domains  (2, 12)

Asymmetric Unit
(-)
Clan: FAD-oxidase_C (26)
(-)
Clan: FAD_PCMH (53)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q6NAV4_RHOPA | Q6NAV4)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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