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(-) Description

Title :  CRYSTAL STRUCTURE OF A BSMA HOMOLOG (MPE_A2762) FROM METHYLOBIUM PETROLEOPHILUM PM1 AT 1.91 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  12 Nov 10  (Deposition) - 08 Dec 10  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Quorum Sensing, Biofilm Formation, Double-Stranded Beta-Helix Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Xu, J. Grant, H. J. Chiu, C. L. Farr, L. Jaroszewski, M. W. Knuth, M. D. Miller, S. A. Lesley, A. Godzik, M. A. Elsliger, A. M. Deacon, I. A. Wilson
Crystal Structure Of A Member Of A Novel Family Of Dioxygenases (Pf10014) Reveals A Conserved Cupin Fold And Active Site.
Proteins V. 82 164 2014
PubMed-ID: 23852666  |  Reference-DOI: 10.1002/PROT.24362

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MPE_A2762
    Organism Scientific: METHYLIBIUM PETROLEIPHILUM
    Organism Taxid: 420662
    Strain: PM1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric Unit (3, 16)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3MSE14Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3MSE7Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 7)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL-1Ligand/IonGLYCEROL
3MSE7Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:49 , GLU A:50 , GLU A:51 , LEU A:52 , TYR A:66 , ARG A:149 , ASP A:151BINDING SITE FOR RESIDUE GOL A 254
2AC2SOFTWAREARG A:166BINDING SITE FOR RESIDUE CL A 255

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3PL0)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Gln A:77 -Pro A:78
2Gln B:77 -Pro B:78
3Thr B:160 -Pro B:161

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3PL0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3PL0)

(-) Exons   (0, 0)

(no "Exon" information available for 3PL0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:254
 aligned with A2SJH7_METPP | A2SJH7 from UniProtKB/TrEMBL  Length:253

    Alignment length:254
                             1                                                                                                                                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249    
         A2SJH7_METPP     - -MHVDIELPLGRATALQRLRAQGFCVLTPAALETLTGMPLDAFDMMLPYWEELAPDLHLKDGGHYRYRRHGCFMQTLQPGQLETVQHRAHWQPTTYNALHGGMERWFEPLSNEMIHLPSWSALLVALGELFAKLRAPQGGRWYIEAHPFRIDTEGGVGRPTPEGAHRDGVDFVAVVFIGRQGVRGGETRVFDAAGPQGVRFTLEQPWTVLLLDDQQVIHESTPLLPLDPADPAVPAHRDTLVLTYRSGGFQAPA 253
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhheeeehhhhhhhhhh.hhhhhhhhhhhhhh.ee.........eeee..eeeeee....eeee.....eee..........eee.....hhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeeeeeee...................eeeeeeeeee.eee..eeeee....eeeee.......eeeee...eeeee..eee..........eeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pl0 A   0 GmHVDIELPLGRATALQRLRAQGFCVLTPAALETLTGmPLDAFDmmLPYWEELAPDLHLKDGGHYRYRRHGCFmQTLQPGQLETVQHRAHWQPTTYNALHGGmERWFEPLSNEmIHLPSWSALLVALGELFAKLRAPQGGRWYIEAHPFRIDTEGGVGRPTPEGAHRDGVDFVAVVFIGRQGVRGGETRVFDAAGPQGVRFTLEQPWTVLLLDDQQVIHESTPLLPLDPADPAVPAHRDTLVLTYRSGGFQAPA 253
                             |       9        19        29       |39    ||  49        59        69   |    79        89        99  |    109   |   119       129       139       149       159       169       179       189       199       209       219       229       239       249    
                             |                                  37-MSE 44-MSE                       73-MSE                      102-MSE    113-MSE                                                                                                                                        
                             1-MSE                                      45-MSE                                                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:252
 aligned with A2SJH7_METPP | A2SJH7 from UniProtKB/TrEMBL  Length:253

    Alignment length:254
                             1                                                                                                                                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249    
         A2SJH7_METPP     - -MHVDIELPLGRATALQRLRAQGFCVLTPAALETLTGMPLDAFDMMLPYWEELAPDLHLKDGGHYRYRRHGCFMQTLQPGQLETVQHRAHWQPTTYNALHGGMERWFEPLSNEMIHLPSWSALLVALGELFAKLRAPQGGRWYIEAHPFRIDTEGGVGRPTPEGAHRDGVDFVAVVFIGRQGVRGGETRVFDAAGPQGVRFTLEQPWTVLLLDDQQVIHESTPLLPLDPADPAVPAHRDTLVLTYRSGGFQAPA 253
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------BsmA-3pl0B01 B:45-244                                                                                                                                                                                   --------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------BsmA-3pl0B02 B:45-244                                                                                                                                                                                   --------- Pfam domains (2)
         Sec.struct. author ..........hhhhhhhhhhhhheeeehhhhhhhhhh.hhhhhhhhhhhhhh.ee..........eee..eeeeee....eeee.....eeee........eeee.....hhhhhhhhhhhhhhhhhhhhhhh...hhh.eeeeeeeeeeee...................eeeeeeeeee.eee..eeeee....eeeee......eeeeee...eeeee..eee...--.....eeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pl0 B   0 GmHVDIELPLGRATALQRLRAQGFCVLTPAALETLTGmPLDAFDmmLPYWEELAPDLHLKDGGHYRYRRHGCFmQTLQPGQLETVQHRAHWQPTTYNALHGGmERWFEPLSNEmIHLPSWSALLVALGELFAKLRAPQGGRWYIEAHPFRIDTEGGVGRPTPEGAHRDGVDFVAVVFIGRQGVRGGETRVFDAAGPQGVRFTLEQPWTVLLLDDQQVIHESTPLLPLDP--PAVPAHRDTLVLTYRSGGFQAPA 253
                             |       9        19        29       |39    ||  49        59        69   |    79        89        99  |    109   |   119       129       139       149       159       169       179       189       199       209       219        |- |     239       249    
                             1-MSE                              37-MSE 44-MSE                       73-MSE                      102-MSE    113-MSE                                                                                                            228  |                      
                                                                        45-MSE                                                                                                                                                                                   231
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3PL0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3PL0)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: BsmA] (1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3PL0)

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