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Title :  CRYSTAL STRUCTURE OF CRYPTOSPORIDIUM PARVUM U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5
 
Authors :  A. Dong, M. Gao, Y. Zhao, J. Lew, G. A. Wasney, I. Kozieradzki, M. Vedadi, A. Edwards, C. Arrowsmith, J. Weigelt, M. Sundstrom, A. Bochkarev, R. J. Artz, Structural Genomics Consortium (Sgc)
Date :  01 Nov 10  (Deposition) - 02 Feb 11  (Release) - 02 Feb 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.14
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  U6 Snrna-Associated Sm-Like Protein, Lsm5, Dna Binding Protein, Structural Genomics, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Vedadi, J. Lew, J. Artz, M. Amani, Y. Zhao, A. Dong, G. A. Wasney, M. Gao, T. Hills, S. Brokx, W. Qiu, S. Sharma, A. Diassiti, Z. Alam, M. Melone, A. Mulichak, A. Wernimont, J. Bray, P. Loppnau, O. Plotnikova, K. Newberry, E. Sundararajan, S. Houston, J. Walker, W. Tempel, A. Bochkarev, I. Kozieradzki, A. Edwards, C. Arrowsmith, D. Roos, K. Kain, R. Hui
Genome-Scale Protein Expression And Structural Biology Of Plasmodium Falciparum And Related Apicomplexan Organisms.
Mol. Biochem. Parasitol. V. 151 100 2007
PubMed-ID: 17125854  |  Reference-DOI: 10.1016/J.MOLBIOPARA.2006.10.011

(-) Compounds

Molecule 1 - U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5. SM DOMAIN
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidP28-LIC-THROMBIN DERIVED FROM PET28
    Expression System StrainBL21 CODON PLUS RIL
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    GeneCGD7_4580
    Organism ScientificCRYPTOSPORIDIUM PARVUM
    Organism Taxid5807

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (3x)AB

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
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Chain A from PDB  Type:PROTEIN  Length:78
 aligned with Q5CXX3_CRYPI | Q5CXX3 from UniProtKB/TrEMBL  Length:121

    Alignment length:89
                                    34        44        54        64        74        84        94       104         
         Q5CXX3_CRYPI    25 NIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAMLVPGG 113
               SCOP domains d3pgga_ A: U6 snRNA-associated sm-like protein LSM5                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeeeee...-----------.eeeeeee..eeehhh.eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                 3pgg A  25 NIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKAD-----------KRVMVNRLETILLSGNNVAMLVPGG 113
                                    34        44        54        64        74  |      -    |   94       104         
                                                                               77          89                        

Chain B from PDB  Type:PROTEIN  Length:80
 aligned with Q5CXX3_CRYPI | Q5CXX3 from UniProtKB/TrEMBL  Length:121

    Alignment length:92
                                    32        42        52        62        72        82        92       102       112  
         Q5CXX3_CRYPI    23 GGNIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAMLVPGGD 114
               SCOP domains d3pggb_ B: U6 snRNA-associated sm-like protein LSM5                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhh...eeeeee...eeeeeeeeee.....eeeeeeeeeee..------------.eeeeeeeeeeee....eeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 3pgg B  23 GGNIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKA------------KRVMVNRLETILLSGNNVAMLVPGGD 114
                                    32        42        52        62        72   |     -      | 92       102       112  
                                                                                76           89                         

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 Classification and Annotation

(-) SCOP Domains  (1, 2)

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