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Title :   CRYSTAL STRUCTURE OF A PUTATIVE ADHESIN (BF0245) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 2.07 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   27 Oct 10 (Deposition) - 09 Feb 11 (Release) - 20 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.07

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A  (1x)
Biol. Unit 3: B  (1x)

Keywords :   Right-Handed Beta-Helix, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Adhesin (Bf0245) From Bacteroides Fragilis Nctc 9343 At 2. 07 A Resolution
To Be Published
PubMed: search

Molecule 1 - PUTATIVE ADHESIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	HK100
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	SEQUENCE DATABASE RESIDUES 25-244
	Gene	:	BF0202
	Organism Scientific	:	BACTEROIDES FRAGILIS NCTC 9343
	Organism Taxid	:	272559
	Strain	:	ATCC 25285 / NCTC 9343
	Synonym	:	PUTATIVE LIPOPROTEIN

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:	A
Biological Unit 3 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 22)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	CL	2	Ligand/Ion	CHLORIDE ION
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
4	PG4	14	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 1 (3, 20)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
4	PG4	14	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 2 (3, 11)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
4	PG4	8	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 3 (3, 9)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
4	PG4	6	Ligand/Ion	TETRAETHYLENE GLYCOL

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:185 , ALA A:186 , GLY A:187	BINDING SITE FOR RESIDUE CL A 246
02	AC2	SOFTWARE	VAL A:52 , ILE A:75 , ILE A:92 , PHE A:101 , MSE A:104	BINDING SITE FOR RESIDUE ACT A 247
03	AC3	SOFTWARE	TYR A:56 , TYR A:70 , LYS A:105 , HOH A:397	BINDING SITE FOR RESIDUE PG4 A 249
04	AC4	SOFTWARE	LYS A:64 , LYS A:94 , LYS A:119 , HOH A:363 , ARG B:217 , VAL B:219 , LYS B:236 , VAL B:238	BINDING SITE FOR RESIDUE PG4 A 251
05	AC5	SOFTWARE	THR A:61 , ASP A:62 , LYS A:84 , PHE A:89 , HOH A:479	BINDING SITE FOR RESIDUE PG4 A 254
06	AC6	SOFTWARE	GLU A:43 , ASN A:45 , ASN A:86 , SER A:95 , LYS A:96 , THR A:112 , HOH A:515	BINDING SITE FOR RESIDUE PG4 A 255
07	AC7	SOFTWARE	LYS A:179 , GLN A:199 , LYS B:140 , VAL B:142 , PG4 B:257	BINDING SITE FOR RESIDUE PG4 A 256
08	AC8	SOFTWARE	ALA A:171 , GLN A:172 , ARG A:190 , ASN A:192 , THR A:209	BINDING SITE FOR RESIDUE PG4 A 260
09	AC9	SOFTWARE	ASN A:128 , HOH A:549	BINDING SITE FOR RESIDUE PG4 A 261
10	BC1	SOFTWARE	ARG A:37 , THR A:61 , ILE A:79 , GLN A:80 , VAL A:81	BINDING SITE FOR RESIDUE PG4 A 262
11	BC2	SOFTWARE	GLU B:185 , ALA B:186 , GLY B:187	BINDING SITE FOR RESIDUE CL B 245
12	BC3	SOFTWARE	THR B:51 , VAL B:52 , ILE B:92 , PHE B:101 , MSE B:104	BINDING SITE FOR RESIDUE ACT B 248
13	BC4	SOFTWARE	TYR B:56 , TYR B:70 , LYS B:105	BINDING SITE FOR RESIDUE PG4 B 250
14	BC5	SOFTWARE	THR B:65 , LYS B:84 , PHE B:89	BINDING SITE FOR RESIDUE PG4 B 252
15	BC6	SOFTWARE	THR B:170 , ALA B:171 , GLN B:172 , ARG B:190 , ASN B:192 , THR B:209	BINDING SITE FOR RESIDUE PG4 B 253
16	BC7	SOFTWARE	MSE A:160 , LYS A:179 , PG4 A:256 , MSE B:160 , VAL B:162 , LYS B:179 , GLY B:180 , VAL B:181	BINDING SITE FOR RESIDUE PG4 B 257
17	BC8	SOFTWARE	GLY B:50 , LYS B:94 , LYS B:119 , PG4 B:259	BINDING SITE FOR RESIDUE PG4 B 258
18	BC9	SOFTWARE	HOH A:306 , LYS B:119 , GLY B:120 , VAL B:142 , PG4 B:258	BINDING SITE FOR RESIDUE PG4 B 259

(no "SS Bond" information available for 3PET)

(no "Cis Peptide Bond" information available for 3PET)

(no "SAP(SNP)/Variant" information available for 3PET)

(no "PROSITE Motif" information available for 3PET)

(no "Exon" information available for 3PET)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:218
 aligned with Q5LIP7_BACFN | Q5LIP7 from UniProtKB/TrEMBL  Length:244

    Alignment length:218
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236        
         Q5LIP7_BACFN    27 GIQPSKKLITRDYKVKEFNKIDAGTVGNIYYTQSTDGKTDLQIYGPDNIVALIQVAVKDNTLFLSIDKSKKVRNFKKMKITITSPTLNGISFKGVGDVHIENGLTTDNLDIESKGVGNVDIQSLTCQKLNVQSMGVGDVKLEGTAQIAALHSKGVGNIEAGNLRANAVEASSQGVGDITCNATESIDAAVRGVGSIKYKGSPTIKSLSKKGVGTIKNI 244
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee......eeee....eeeeee......eeeeeeehhhhh.eeeeee..eeeeee............eeeeee....eeee.....eee...ee..eeeeee.....eeeeeee..eeeeee.....eeeeeeeeeeeeee.....eeeeeeeeeeeeeee.....eeeeeeeeeeeee.....eeee....eeeeee.....eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pet A  27 GIQPSKKLITRDYKVKEFNKIDAGTVGNIYYTQSTDGKTDLQIYGPDNIVALIQVAVKDNTLFLSIDKSKKVRNFKKmKITITSPTLNGISFKGVGDVHIENGLTTDNLDIESKGVGNVDIQSLTCQKLNVQSmGVGDVKLEGTAQIAALHSKGVGNIEAGNLRANAVEASSQGVGDITCNATESIDAAVRGVGSIKYKGSPTIKSLSKKGVGTIKNI 244
                                    36        46        56        66        76        86        96       106       116       126       136       146       156   |   166       176       186       196       206       216       226       236        
                                                                                                       104-MSE                                                 160-MSE

Chain B from PDB  Type:PROTEIN  Length:218
 aligned with Q5LIP7_BACFN | Q5LIP7 from UniProtKB/TrEMBL  Length:244

    Alignment length:218
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236        
         Q5LIP7_BACFN    27 GIQPSKKLITRDYKVKEFNKIDAGTVGNIYYTQSTDGKTDLQIYGPDNIVALIQVAVKDNTLFLSIDKSKKVRNFKKMKITITSPTLNGISFKGVGDVHIENGLTTDNLDIESKGVGNVDIQSLTCQKLNVQSMGVGDVKLEGTAQIAALHSKGVGNIEAGNLRANAVEASSQGVGDITCNATESIDAAVRGVGSIKYKGSPTIKSLSKKGVGTIKNI 244
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------DUF2807-3petB01 B:43-228                                                                                                                                                                  ---------------- Pfam domains (1)
           Pfam domains (2) ----------------DUF2807-3petB02 B:43-228                                                                                                                                                                  ---------------- Pfam domains (2)
         Sec.struct. author .......eeeeee......eeee....eeeeee......eeeeeeehhhhh.eeeeee..eeeeee............eeeeee....eeee.....eee...ee..eeeeee.....eeeeeee..eeeeee.....eeeeeeeeeeeeee.....eeeeeeeeeeeeeee.....eeeeeeeeeeeee.....eeee....eeeeee.....eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pet B  27 GIQPSKKLITRDYKVKEFNKIDAGTVGNIYYTQSTDGKTDLQIYGPDNIVALIQVAVKDNTLFLSIDKSKKVRNFKKmKITITSPTLNGISFKGVGDVHIENGLTTDNLDIESKGVGNVDIQSLTCQKLNVQSmGVGDVKLEGTAQIAALHSKGVGNIEAGNLRANAVEASSQGVGDITCNATESIDAAVRGVGSIKYKGSPTIKSLSKKGVGTIKNI 244
                                    36        46        56        66        76        86        96       106       116       126       136       146       156   |   166       176       186       196       206       216       226       236        
                                                                                                       104-MSE                                                 160-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3PET)

(no "CATH Domain" information available for 3PET)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: 6_Hairpin (120)

Family: DUF2807 (4)

Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) (1)

1a	DUF2807-3petB01	B:43-228
1b	DUF2807-3petB02	B:43-228

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	Cis Peptide Bonds
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 22)

Sites (18, 18)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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