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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE CARBON-NITROGEN FAMILY HYDROLASE FROM STAPHYLOCOCCUS AUREUS
 
Authors :  R. D. Gordon, W. Qiu, K. Battaile, K. Lam, M. Soloveychik, D. Benetteraj V. Romanov, E. F. Pai, N. Y. Chirgadze
Date :  14 Oct 10  (Deposition) - 19 Oct 11  (Release) - 19 Oct 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Qiu, R. D. Gordon, K. Battaile, K. Lam, M. Soloveychik, D. Benetteraj, V. Romanov, E. F. Pai, N. Y. Chirgadze
Crystal Structure Of Carbon-Nitrogen Family Hydrolase From Staphylococcus Aureus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYDROLASE, CARBON-NITROGEN FAMILY
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SACOL2021
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS COL
    Organism Taxid: 93062
    Strain: COL
    Synonym: CARBON-NITROGEN FAMILY HYDROLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 23)

Asymmetric/Biological Unit (6, 23)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3MSE12Mod. Amino AcidSELENOMETHIONINE
4PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
5PGE2Ligand/IonTRIETHYLENE GLYCOL
6TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:19 , GLN A:62 , HOH A:311 , HOH A:505 , GLU B:19 , GLN B:62BINDING SITE FOR RESIDUE TRS A 262
02AC2SOFTWARELYS A:100 , TYR A:128 , VAL A:129BINDING SITE FOR RESIDUE CL A 263
03AC3SOFTWAREASN A:191 , ASN A:192 , ARG A:246 , ILE A:249 , PRO A:250 , VAL A:251 , PHE A:252 , LYS A:253 , HOH A:462 , HOH A:469BINDING SITE FOR RESIDUE PEG A 264
04AC4SOFTWAREVAL A:114 , PRO A:115 , MSE A:116 , TYR A:147 , ARG A:176 , CL A:270 , HOH A:280 , ASN B:248 , PRO B:250BINDING SITE FOR RESIDUE PEG A 265
05AC5SOFTWAREGLU A:54 , ASN A:58 , HOH A:349 , HOH A:386 , HOH A:438 , ASP B:14 , SER B:16 , LYS B:17 , HOH B:451BINDING SITE FOR RESIDUE PGE A 266
06AC6SOFTWAREGLU A:27 , LYS A:73 , TYR A:74 , HOH A:342 , HOH A:432BINDING SITE FOR RESIDUE PGE A 267
07AC7SOFTWAREHIS A:0 , GLU A:33 , ASP A:35 , HOH A:303BINDING SITE FOR RESIDUE GOL A 268
08AC8SOFTWAREASP A:77 , LEU A:135 , SER A:136 , ASP A:137 , HOH A:365BINDING SITE FOR RESIDUE CL A 269
09AC9SOFTWAREARG A:150 , PEG A:265 , HOH A:273BINDING SITE FOR RESIDUE CL A 270
10BC1SOFTWAREARG A:-3 , ASN A:59 , ASN A:85 , ARG A:87 , GLU A:107BINDING SITE FOR RESIDUE CL A 271
11BC2SOFTWAREASN B:191 , ASN B:192 , ARG B:246 , ILE B:249 , PRO B:250 , VAL B:251 , PHE B:252 , HOH B:271BINDING SITE FOR RESIDUE PEG B 262

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3P8K)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3P8K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3P8K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3P8K)

(-) Exons   (0, 0)

(no "Exon" information available for 3P8K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:268
 aligned with A0A0H2WXM0_S | A0A0H2WXM0 from UniProtKB/TrEMBL  Length:261

    Alignment length:268
                                   1                                                                                                                                                                                                                                                                    
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253        
         A0A0H2WXM0_S     - -------MKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGEYVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK 261
               SCOP domains d3p8ka_ A: automated matches                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee......hhhhhhhhhhhhhhhhh.....eee.........hhhhhhhhhee.hhhhhhhhhhhhhhhh.eeeeeeeeeee..eeeeeeeee.....eeeeee........hhhhh..........ee.....eeeeee.hhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhhhhhh.eeeeee.eee....eee...eee.....eeee.....eeeeeeeehhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p8k A  -6 LVPRGSHmKVQIYQLPIVFGDSSKNETQITQWFEKNmNAEVDVVVLPEmWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPmLREHEFLTAGEYVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPmSRLQHWHSLLKARAIENNmFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK 261
                                   | 3        13        23      | 33        43        53        63        73        83        93       103       113  |    123       133       143       153       163       173|      183       193       203       213       223       233       243       253        
                                   1-MSE                       30-MSE      42-MSE                                                                   116-MSE                                                   174-MSE            193-MSE                                                                


Chain B from PDB  Type:PROTEIN  Length:268
 aligned with A0A0H2WXM0_S | A0A0H2WXM0 from UniProtKB/TrEMBL  Length:261

    Alignment length:268
                                   1                                                                                                                                                                                                                                                                    
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253        
         A0A0H2WXM0_S     - -------MKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGEYVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK 261
               SCOP domains d3p8kb_ B: automated matches                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee......hhhhhhhhhhhhhhhhh.....eee.........hhhhhhhhhee.hhhhhhhhhhhhhhhh.eeeeeeeeeee..eeeeeeeee.....eeeeee........hhhhhh.........ee.....eeeeee.hhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhhhhhh.eeeeee.eee....eee...eee.....eeee.....eeeeeeeehhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3p8k B  -6 LVPRGSHmKVQIYQLPIVFGDSSKNETQITQWFEKNmNAEVDVVVLPEmWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPmLREHEFLTAGEYVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPmSRLQHWHSLLKARAIENNmFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK 261
                                   | 3        13        23      | 33        43        53        63        73        83        93       103       113  |    123       133       143       153       163       173|      183       193       203       213       223       233       243       253        
                                   1-MSE                       30-MSE      42-MSE                                                                   116-MSE                                                   174-MSE            193-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3P8K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3P8K)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3P8K)

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