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(-) Description

Title :  STRUCTURE OF PHOSPHOTRANSFERASE ENZYME II, A COMPONENT FROM YERSINIA PESTIS CO92 AT 1.2 A RESOLUTION
 
Authors :  E. V. Filippova, Z. Wawrzak, M. Kudritska, A. Edwards, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date :  21 Sep 10  (Deposition) - 13 Oct 10  (Release) - 13 Oct 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Phosphotransferase Enzyme Ii, A Component, Yersinia Pestis Co92, Amino Acid Biosynthesis, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. V. Filippova, Z. Wawrzak, M. Kudritska, A. Edwards, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Structure Of Phosphotransferase Enzyme Ii, A Component From Yersinia Pestis Co92 At 1. 2 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PHOSPHOTRANSFERASE ENZYME II, A COMPONENT
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-CODONPLUS(DE3)-RIPL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PTSN1, YPO2569, YP_2380, Y1618
    Organism Scientific: YERSINIA PESTIS
    Organism Taxid: 214092
    Strain: CO92
    Synonym: PUTATIVE PHOSPHOTRANSFERASE SYSTEM IIA COMPONENT

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE4Mod. Amino AcidSELENOMETHIONINE
3SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:20 , ARG A:21 , ASN A:90 , HOH A:328BINDING SITE FOR RESIDUE SO4 A 148
2AC2SOFTWAREHOH A:197 , HOH A:250 , GLU B:38 , ARG B:40 , HOH B:218 , HOH B:266 , HOH B:371BINDING SITE FOR RESIDUE SO4 B 148
3AC3SOFTWARETHR A:124 , ALA A:125 , SER A:126 , TRP B:20 , ARG B:21 , HOH B:366BINDING SITE FOR RESIDUE GOL B 149

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OXP)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:95 -Pro A:96
2Asp B:95 -Pro B:96

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OXP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OXP)

(-) Exons   (0, 0)

(no "Exon" information available for 3OXP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:148
 aligned with Q7CJ97_YERPE | Q7CJ97 from UniProtKB/TrEMBL  Length:147

    Alignment length:148
                             1                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139        
         Q7CJ97_YERPE     - -MLKTLLTSDVIQVVSQAKDWRDAIAISCQPLIDNGAVEARYVEAIYRSHEAIGPYYVVGPGIAMPHARPEDGVNRLSLALTVITEGVTFNAEGNDPVKLLIVLAATDSNSHIEAISQLAQLFDTASDVQALLNAKTPQDILSVIARY 147
               SCOP domains d3oxpa_ A: automated matches                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh.eeee....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eee..ee....hhhhh....eeeeeeeeeee...hhhhh.eeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oxp A   0 AmLKTLLTSDVIQVVSQAKDWRDAIAISCQPLIDNGAVEARYVEAIYRSHEAIGPYYVVGPGIAmPHARPEDGVNRLSLALTVITEGVTFNAEGNDPVKLLIVLAATDSNSHIEAISQLAQLFDTASDVQALLNAKTPQDILSVIARY 147
                             |       9        19        29        39        49        59    |   69        79        89        99       109       119       129       139        
                             |                                                             64-MSE                                                                               
                             1-MSE                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:148
 aligned with Q7CJ97_YERPE | Q7CJ97 from UniProtKB/TrEMBL  Length:147

    Alignment length:148
                             1                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139        
         Q7CJ97_YERPE     - -MLKTLLTSDVIQVVSQAKDWRDAIAISCQPLIDNGAVEARYVEAIYRSHEAIGPYYVVGPGIAMPHARPEDGVNRLSLALTVITEGVTFNAEGNDPVKLLIVLAATDSNSHIEAISQLAQLFDTASDVQALLNAKTPQDILSVIARY 147
               SCOP domains d3oxpb_ B: automated matches                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----PTS_EIIA_2-3oxpB01 B:4-147                                                                                                                       Pfam domains (1)
           Pfam domains (2) ----PTS_EIIA_2-3oxpB02 B:4-147                                                                                                                       Pfam domains (2)
         Sec.struct. author hhhhhhhhhh.eeee....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...eee..ee....hhhhh....eeeeeeeeeee...hhhhh.eeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oxp B   0 AmLKTLLTSDVIQVVSQAKDWRDAIAISCQPLIDNGAVEARYVEAIYRSHEAIGPYYVVGPGIAmPHARPEDGVNRLSLALTVITEGVTFNAEGNDPVKLLIVLAATDSNSHIEAISQLAQLFDTASDVQALLNAKTPQDILSVIARY 147
                             |       9        19        29        39        49        59    |   69        79        89        99       109       119       129       139        
                             1-MSE                                                         64-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OXP)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: PTase-anion_tr (3)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q7CJ97_YERPE | Q7CJ97)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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