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(-) Description

Title :  THREE-DIMENSIONAL STRUCTURE OF THE PUTATIVE UNCHARACTERIZED PROTEIN FROM RHIZOBIUM LEGUMINOSARUM AT THE RESOLUTION 1.9A, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET RLR261
 
Authors :  A. Kuzin, S. Lew, J. Seetharaman, M. Mao, R. Xiao, C. Ciccosanti, D. Wang J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J Northeast Structural Genomics Consortium (Nesg)
Date :  13 Sep 10  (Deposition) - 22 Sep 10  (Release) - 22 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Kuzin, S. Lew, J. Seetharaman, M. Mao, R. Xiao, C. Ciccosanti, D. Wang, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Northeast Structural Genomics Consortium Target Rlr261
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Gene: RL2761
    Mutation: YES
    Organism Scientific: RHIZOBIUM LEGUMINOSARUM BV. VICIAE
    Organism Taxid: 216596
    Strain: 3841

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2MSE4Mod. Amino AcidSELENOMETHIONINE
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:38 , TYR A:90 , ALA A:134 , ARG A:135 , GLY A:138 , THR A:139 , HOH A:163 , HOH A:196 , HOH A:280 , HOH A:287BINDING SITE FOR RESIDUE MES A 159
2AC2SOFTWAREASN B:145 , PHE B:149 , ARG B:152 , HOH B:352BINDING SITE FOR RESIDUE PEG B 159

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OTL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OTL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OTL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OTL)

(-) Exons   (0, 0)

(no "Exon" information available for 3OTL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:153
 aligned with Q1MFM4_RHIL3 | Q1MFM4 from UniProtKB/TrEMBL  Length:158

    Alignment length:153
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151   
         Q1MFM4_RHIL3     2 TIRSAEHATLVIERHLKAPISRVFRAWSTPESKRQWFACHGEWVPLDYGLDFRPGGTERNYVADTDGLLHAYDAHYIDIVPDARIIYAYEMKLGESRISASLTTVAFEAAPGGTKMVFTEQVVFLDGYADNGARLQGTEIGLDNLELFLEREE 154
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeee..hhhhhhhhhhhhhhhhhhhh.....eeeeeee......eeeeeee.....eeeeeeeeeeee...eeeeeeeeee..eeeeeeeeeeeeeee..eeeeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3otl A   2 TIRSAEHATLVIERHLKAPIARVFRAWSAPEAKRQWFACHGEWQALDYGLDFRPGGTERNYVADTDGLLHAYDAHYIDIVPNARIIYAYEmKLGETRISASLTTVAFEAEPGGTKmVFTEQVVFLDGYADNGARLQGTEIGLDNLELFLEREE 154
                                    11        21        31        41        51        61        71        81        91|      101       111     | 121       131       141       151   
                                                                                                                     92-MSE                  117-MSE                                 


Chain B from PDB  Type:PROTEIN  Length:152
 aligned with Q1MFM4_RHIL3 | Q1MFM4 from UniProtKB/TrEMBL  Length:158

    Alignment length:152
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151  
         Q1MFM4_RHIL3     2 TIRSAEHATLVIERHLKAPISRVFRAWSTPESKRQWFACHGEWVPLDYGLDFRPGGTERNYVADTDGLLHAYDAHYIDIVPDARIIYAYEMKLGESRISASLTTVAFEAAPGGTKMVFTEQVVFLDGYADNGARLQGTEIGLDNLELFLERE 153
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------AHSA1-3otlB01 B:18-151                                                                                                                -- Pfam domains (1)
           Pfam domains (2) ----------------AHSA1-3otlB02 B:18-151                                                                                                                -- Pfam domains (2)
         Sec.struct. author ....eeeeeeeeeeee..hhhhhhhhhhhhhhhhhhhh.........eeee.....eeeeeee.....eeeeeeeeeeee...eeeeeeeeee..eeeeeeeeeeeeeee..eeeeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3otl B   2 TIRSAEHATLVIERHLKAPIARVFRAWSAPEAKRQWFACHGEWQALDYGLDFRPGGTERNYVADTDGLLHAYDAHYIDIVPNARIIYAYEmKLGETRISASLTTVAFEAEPGGTKmVFTEQVVFLDGYADNGARLQGTEIGLDNLELFLERE 153
                                    11        21        31        41        51        61        71        81        91|      101       111     | 121       131       141       151  
                                                                                                                     92-MSE                  117-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OTL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OTL)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: Bet_V_1_like (93)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q1MFM4_RHIL3 | Q1MFM4)
biological process
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

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