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(-) Description

Title :  ALBC, A CYCLODIPEPTIDE SYNTHASE FROM STREPTOMYCES NOURSEI
 
Authors :  L. Sauguet, M. H. Ledu, J. B. Charbonnier, M. Gondry
Date :  04 Sep 10  (Deposition) - 16 Feb 11  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Rossmann Fold, Cyclodipeptide Synthase, Aminoacyl-Trna, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Sauguet, M. Moutiez, Y. Li, P. Belin, J. Seguin, M. H. Le Du, R. Thai, C. Masson, M. Fonvielle, J. L. Pernodet, J. B. Charbonnier, M. Gondry
Cyclodipeptide Synthases, A Family Of Class-I Aminoacyl-Trn Synthetase-Like Enzymes Involved In Non-Ribosomal Peptide Synthesis.
Nucleic Acids Res. V. 39 4475 2011
PubMed-ID: 21296757  |  Reference-DOI: 10.1093/NAR/GKR027

(-) Compounds

Molecule 1 - ALBC
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ALBC
    Organism Scientific: STREPTOMYCES NOURSEI
    Organism Taxid: 1971

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1DTD1Ligand/IonDITHIANE DIOL
2PO43Ligand/IonPHOSPHATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:35 , VAL A:67 , GLU A:182 , PO4 A:249 , HOH A:273 , HOH A:291 , HOH A:298BINDING SITE FOR RESIDUE DTD A 248
2AC2SOFTWARESER A:37 , MET A:152 , TYR A:178 , GLU A:182 , DTD A:248 , HOH A:252 , HOH A:273 , HOH A:296BINDING SITE FOR RESIDUE PO4 A 249
3AC3SOFTWAREHIS A:70 , GLN A:123 , ARG A:132 , HOH A:265 , HOH A:339 , HOH A:347BINDING SITE FOR RESIDUE PO4 A 250
4AC4SOFTWAREARG A:87 , LYS A:90 , ARG A:91 , LYS A:94 , ARG A:98 , HOH A:357 , HOH A:358BINDING SITE FOR RESIDUE PO4 A 251

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OQV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OQV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OQV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OQV)

(-) Exons   (0, 0)

(no "Exon" information available for 3OQV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:211
 aligned with CLPS_STRNR | Q8GED7 from UniProtKB/Swiss-Prot  Length:239

    Alignment length:212
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237  
           CLPS_STRNR    28 RGEHALIGISAGNSYFSQKNTVMLLQWAGQRFERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLESVGDHAERFRVRSLSELQETPEYRAVRERTDRAFEEDAEFATACEDMVRAVVMNRPGDGVGISAEHLRAGLNYVLAEAPLFADSPGVFSVPSSVLCYHIDTPITAFLSRRETGFRAAEGQAYVVVRPQELADAA 239
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee......hhhhhhhhhhhhhhheeeeeeeee..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeehhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhh...-.......eeeee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oqv A  28 RGEHALIGISAGNSYFSQKNTVMLLQWAGQRFERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLESVGDHAERFRVRSLSELQETPEYRAVRERTDRAFEEDAEFATACEDMVRAVVMNRPGDGVGISAEHLRAGLNYVLAEAPLFADSPGVFSVPSSVLCYHIDTPITAFLSRRE-GFRAAEGQAYVVVRPQELADAA 239
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207        |-|      227       237  
                                                                                                                                                                                                                      216 |                     
                                                                                                                                                                                                                        218
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OQV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OQV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3OQV)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CLPS_STRNR | Q8GED7)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016755    transferase activity, transferring amino-acyl groups    Catalysis of the transfer of an amino-acyl group from one compound (donor) to another (acceptor).
biological process
    GO:0002780    antibacterial peptide biosynthetic process    The chemical reactions and pathways resulting in the formation of an antibacterial peptide.

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 Related Entries

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        CLPS_STRNR | Q8GED7: 4q24

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