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(-) Description

Title :  PUTATIVE 3-DEMETHYLUBIQUINONE-9 3-METHYLTRANSFERASE, PHNB PROTEIN, FROM BACILLUS CEREUS.
 
Authors :  J. Osipiuk, H. Li, J. Abdullah, A. Joachimiak, Midwest Center For St Genomics (Mcsg)
Date :  27 Aug 10  (Deposition) - 08 Sep 10  (Release) - 08 Sep 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Methyltransferase, Glyoxalase Family, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, H. Li, J. Abdullah, A. Joachimiak
X-Ray Crystal Structure Of Putative 3-Demethylubiquinone-9 3-Methyltransferase, Phnb Protein, From Bacillus Cereus.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PHNB PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BC_2431
    Organism Scientific: BACILLUS CEREUS
    Organism Taxid: 226900
    Strain: ATCC 14579

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 14)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:37 , ARG A:39 , SER A:111 , TYR A:112BINDING SITE FOR RESIDUE EDO A 501
2AC2SOFTWARESER A:27 , LEU A:28BINDING SITE FOR RESIDUE EDO A 502

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:44 -Pro A:45

 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:129
 aligned with Q81DD6_BACCR | Q81DD6 from UniProtKB/TrEMBL  Length:135

    Alignment length:129
                                    15        25        35        45        55        65        75        85        95       105       115       125         
         Q81DD6_BACCR     6 QKITTFLMFEGKAEEAMNFYTSLFDQSEIVSISRYDENGPGKEGTVIHATFTLNGQEFMCIDSYVNHNFTFTPAMSLYVTCETEEEIDTVFHKLAQDGAILMPLGSYPFSKKFGWLNDKYGVSWQLTLA 134
               SCOP domains d3omsa_ A: automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains 3-dmu-9_3-mt-3omsA01 A:6-132                                                                                                   -- Pfam domains
         Sec.struct. author ....eeeee..hhhhhhhhhhh......eeeeee...........eeeeeeee..eeeeeee..............eeeee.hhhhhhhhhhhhhh..eeeeeeeee..eeeeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3oms A   6 QKITTFLmFEGKAEEAmNFYTSLFDQSEIVSISRYDENGPGKEGTVIHATFTLNGQEFmCIDSYVNHNFTFTPAmSLYVTCETEEEIDTVFHKLAQDGAILmPLGSYPFSKKFGWLNDKYGVSWQLTLA 134
                                   |15      | 25        35        45        55        65        75    |   85        95       105 |     115       125         
                                  13-MSE   22-MSE                                    64-MSE          80-MSE                    107-MSE
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OMS)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: Glyoxalase (58)

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