3OM8 - JenaLib

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Title :   THE CRYSTAL STRUCTURE OF A HYDROLASE FROM PSEUDOMONAS AERUGINOSA PA01

Authors :   K. Tan, G. Chhor, K. Buck, A. Joachimiak, Midwest Center For Structu Genomics (Mcsg)

Date :   26 Aug 10 (Deposition) - 22 Sep 10 (Release) - 22 Sep 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.25

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)
Biol. Unit 2: A,B  (1x)
Biol. Unit 3: A (1x),B (1x)
Biol. Unit 4: A  (1x)
Biol. Unit 5: B  (1x)

Keywords :   Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Tan, G. Chhor, K. Buck, A. Joachimiak
The Crystal Structure Of A Hydrolase From Pseudomonas Aeruginosa Pa01
To Be Published
PubMed: search

Molecule 1 - PROBABLE HYDROLASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG19B
	Expression System Strain	:	PPK1037
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PA0480
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	208964
	Strain	:	PA01

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B
Biological Unit 2 (1x)	:	A	B
Biological Unit 3 (1x)	:	A (1x)	B (1x)
Biological Unit 4 (1x)	:	A
Biological Unit 5 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 12)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	MES	2	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (3, 24)

No.	Name	Count	Type	Full Name
1	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
2	MES	4	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	MSE	16	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (3, 12)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	MES	2	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (3, 6)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 4 (3, 6)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 5 (3, 6)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:195 , THR A:196 , ASP A:197 , LEU A:198 , GLN A:201 , HOH A:322	BINDING SITE FOR RESIDUE MES A 265
2	AC2	SOFTWARE	SER A:33 , ILE A:34 , SER A:99 , LEU A:100	BINDING SITE FOR RESIDUE EDO A 266
3	AC3	SOFTWARE	ASP B:195 , THR B:196 , ASP B:197 , LEU B:198 , GLN B:201	BINDING SITE FOR RESIDUE MES B 265
4	AC4	SOFTWARE	SER B:33 , ILE B:34 , SER B:99 , LEU B:100 , LEU B:128	BINDING SITE FOR RESIDUE EDO B 266

(no "SS Bond" information available for 3OM8)

Asymmetric Unit

No.	Residues
1	Gly A:70	-	Pro A:71
2	Gly A:129	-	Pro A:130
3	Gly B:70	-	Pro B:71
4	Gly B:129	-	Pro B:130

(no "SAP(SNP)/Variant" information available for 3OM8)

(no "PROSITE Motif" information available for 3OM8)

(no "Exon" information available for 3OM8)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:264
 aligned with Q9I638_PSEAE | Q9I638 from UniProtKB/TrEMBL  Length:265

    Alignment length:264
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260    
         Q9I638_PSEAE     1 MGNLSFLATSDGASLAYRLDGAAEKPLLALSNSIGTTLHMWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAEDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLPAVHLSNVEFPQAFEGAVLSFLGA 264
               SCOP domains d3om8a_ A: automated matches                                                                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeee.....eeeeeee......eeeee.....hhhhhhhhhhhhhh..eeeee...............hhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhh...eeeeee......hhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3om8 A   1 AGNLSFLATSDGASLAYRLDGAAEKPLLALSNSIGTTLHmWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAEDmSETAAGFLGNWFPPALLERAEPVVERFRAmLmATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLPAVHLSNVEFPQAFEGAVLSFLGA 264
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      |150       160       170      |180       190       200       210       220       230       240       250       260    
                                                                  40-MSE                                                                                                    147-MSE                       177-MSE                                                                                   
                                                                                                                                                                                                            179-MSE

Chain B from PDB  Type:PROTEIN  Length:265
 aligned with Q9I638_PSEAE | Q9I638 from UniProtKB/TrEMBL  Length:265

    Alignment length:265
                             1                                                                                                                                                                                                                                                                       
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259     
         Q9I638_PSEAE     - -MGNLSFLATSDGASLAYRLDGAAEKPLLALSNSIGTTLHMWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAEDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLPAVHLSNVEFPQAFEGAVLSFLGA 264
               SCOP domains d3om8b_ B: automated matches                                                                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------Abhydrolase_6-3om8B01 B:28-257                                                                                                                                                                                                        ------- Pfam domains (1)
           Pfam domains (2) ----------------------------Abhydrolase_6-3om8B02 B:28-257                                                                                                                                                                                                        ------- Pfam domains (2)
         Sec.struct. author .....eeee.....eeeeeee......eeeee.....hhhhhhhhhhhhhh..eeeee...............hhhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhh...eeeeeee........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhh...eeeeee......hhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3om8 B   0 NAGNLSFLATSDGASLAYRLDGAAEKPLLALSNSIGTTLHmWDAQLPALTRHFRVLRYDARGHGASSVPPGPYTLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAEDmSETAAGFLGNWFPPALLERAEPVVERFRAmLmATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLPAVHLSNVEFPQAFEGAVLSFLGA 264
                                     9        19        29        39|       49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259     
                                                                   40-MSE                                                                                                    147-MSE                       177-MSE                                                                                   
                                                                                                                                                                                                             179-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: alpha/beta-Hydrolases (971)

Superfamily: alpha/beta-Hydrolases (971)

Family: automated matches (184)

Protein domain: automated matches (184)

Pseudomonas aeruginosa [TaxId: 208964] (1)

1a	d3om8a_	A:
1b	d3om8b_	B:

(no "CATH Domain" information available for 3OM8)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: AB_hydrolase (347)

Family: Abhydrolase_6 (67)

Pseudomonas aeruginosa (1)

1a	Abhydrolase_6-3om8B01	B:28-257
1b	Abhydrolase_6-3om8B02	B:28-257

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q9I638_PSEAE | Q9I638)

molecular function
	GO:0047570	3-oxoadipate enol-lactonase activity	Catalysis of the reaction: 3-oxoadipate enol-lactone + H2O = 3-oxoadipate.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
	GO:0042952	beta-ketoadipate pathway	A pathway of aromatic compound degradation by ortho-cleavage; one branch converts protocatechuate, derived from phenolic compounds, to beta-ketoadipate, and the other branch converts catechol, generated from various aromatic hydrocarbons, amino aromatics, and lignin monomers, also to beta-ketoadipate. Two additional steps accomplish the conversion of beta-ketoadipate to tricarboxylic acid cycle intermediates.

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	Cis Peptide Bonds
		Gly A:129 - Pro A:130	[ RasMol ]
		Gly A:70 - Pro A:71	[ RasMol ]
		Gly B:129 - Pro B:130	[ RasMol ]
		Gly B:70 - Pro B:71	[ RasMol ]

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Ligands, Modified Residues, Ions (3, 12)

Sites (4, 4)

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