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(-) Description

Title :  CRYSTAL STRUCTURE OF A PAS DOMAIN FROM TWO-COMPONENT SENSOR HISTIDINE KINASE
 
Authors :  K. Michalska, G. Chhor, J. Bearden, R. J. Fenske, A. Joachimiak, Midwes For Structural Genomics (Mcsg)
Date :  26 Aug 10  (Deposition) - 15 Sep 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.09
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (2x)
Keywords :  Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Histidine Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Michalska, G. Chhor, J. Bearden, R. J. Fenske, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Crystal Structure Of A Pas Domain From Two-Component Sensor Histidine Kinase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TWO-COMPONENT SENSOR HISTIDINE KINASE
    ChainsA, B
    EC Number2.7.13.3
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMCSG7
    Expression System StrainBL21 MAGIC
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentPAS DOMAIN
    GeneALR0428
    Organism ScientificNOSTOC SP.
    Organism Taxid103690
    StrainPCC 7120

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (2x)A 
Biological Unit 2 (2x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:13 , ASP A:37 , GLN B:72BINDING SITE FOR RESIDUE GOL A 116
2AC2SOFTWAREGLU A:93 , HIS B:65 , ASP B:66 , LYS B:73 , TYR B:76BINDING SITE FOR RESIDUE GOL B 116

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3OLO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3OLO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3OLO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3OLO)

(-) Exons   (0, 0)

(no "Exon" information available for 3OLO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:111
 aligned with Q8YZM9_NOSS1 | Q8YZM9 from UniProtKB/TrEMBL  Length:637

    Alignment length:111
                                    13        23        33        43        53        63        73        83        93       103       113 
         Q8YZM9_NOSS1     4 QSELEFKFAHYLINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHDWEEIRQKNNYTFKTRYRSQSGRIFLVEMSLTFLEDQERRFSCVFVREK 114
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..eeeee.....eeeehhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhhhhheeeeeeeee.....eeeeeeeeeeeee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 3olo A   4 QSELEFKFAHYLINNAVEASFCLGDNWQFLYVNDATCRmTEYSREQLLSmNLQDIDVDFALHDWEEIRQKNNYTFKTRYRSQSGRIFLVEmSLTFLEDQERRFSCVFVREK 114
                                    13        23        33        43        53        63        73        83        93|      103       113 
                                                                 42-MSE     53-MSE                                   94-MSE                

Chain B from PDB  Type:PROTEIN  Length:110
 aligned with Q8YZM9_NOSS1 | Q8YZM9 from UniProtKB/TrEMBL  Length:637

    Alignment length:110
                                    14        24        34        44        54        64        74        84        94       104       114
         Q8YZM9_NOSS1     5 SELEFKFAHYLINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHDWEEIRQKNNYTFKTRYRSQSGRIFLVEMSLTFLEDQERRFSCVFVREK 114
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------PAS_9-3oloB01 B:20-113                                                                        - Pfam domains (1)
           Pfam domains (2) ---------------PAS_9-3oloB02 B:20-113                                                                        - Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhh..eeeeee....eeeehhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhh...eeeeeeeee.....eeeeeeeeeeeee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 3olo B   5 SELEFKFAHYLINNAVEASFCLGDNWQFLYVNDATCRmTEYSREQLLSmNLQDIDVDFALHDWEEIRQKNNYTFKTRYRSQSGRIFLVEmSLTFLEDQERRFSCVFVREK 114
                                    14        24        34       |44        54        64        74        84        94       104       114
                                                                42-MSE     53-MSE                                   94-MSE                

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3OLO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3OLO)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: PAS_Fold (84)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q8YZM9_NOSS1 | Q8YZM9)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0000155    phosphorelay sensor kinase activity    Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016772    transferase activity, transferring phosphorus-containing groups    Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
biological process
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0023014    signal transduction by protein phosphorylation    A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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