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(-) Description

Title :  CRYSTAL STRUCTURE OF LIP2 LIPASE FROM YARROWIA LIPOLYTICA AT 1.7 A RESOLUTION
 
Authors :  F. Bordes, S. Tranier, L. Mourey, A. Marty
Date :  19 Jul 10  (Deposition) - 24 Nov 10  (Release) - 24 Nov 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Keywords :  Alpha/Beta-Hydrolase, Lipase, Lipids Binding, Glycosylation, Extracellular, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  F. Bordes, S. Barbe, P. Escalier, L. Mourey, I. Andre, A. Marty, S. Tranier
Exploring The Conformational States And Rearrangements Of Yarrowia Lipolytica Lipase.
Biophys. J. V. 99 2225 2010
PubMed-ID: 20923657  |  Reference-DOI: 10.1016/J.BPJ.2010.07.040

(-) Compounds

Molecule 1 - TRIACYLGLYCEROL LIPASE
    ChainsA, B, C, D, E, F, G
    EC Number3.1.1.3
    EngineeredYES
    Expression SystemYARROWIA LIPOLYTICA
    Expression System Taxid4952
    GeneLIP2, YALI0A20350G
    Organism CommonCANDIDA LIPOLYTICA
    Organism ScientificYARROWIA LIPOLYTICA
    Organism Taxid4952
    SynonymYALI0A20350P

 Structural Features

(-) Chains, Units

  1234567
Asymmetric Unit ABCDEFG
Biological Unit 1 (1x)A      
Biological Unit 2 (1x) B     
Biological Unit 3 (1x)  C    
Biological Unit 4 (1x)   D   
Biological Unit 5 (1x)    E  
Biological Unit 6 (1x)     F 
Biological Unit 7 (1x)      G

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 38)

Asymmetric Unit (4, 38)
No.NameCountTypeFull Name
1K7Ligand/IonPOTASSIUM ION
2MPD13Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3MRD4Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
4NAG14Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
2MPD3Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3MRD1Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (3, 5)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
2MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3MRD1Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (2, 5)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
2MPD3Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3MRD-1Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 4 (3, 5)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
2MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3MRD1Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 5 (2, 4)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
2MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3MRD-1Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 6 (3, 4)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
2MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3MRD1Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 7 (1, 2)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
2MPD-1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3MRD-1Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (38, 38)

Asymmetric Unit (38, 38)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:113 , TYR A:137 , GLY A:141 , ASP A:145 , ASN A:174 , LEU A:175 , ASN A:178 , HIS A:180BINDING SITE FOR RESIDUE NAG A 302
02AC2SOFTWARELEU A:110 , ALA A:112 , ILE A:130 , ASN A:134 , ASN A:138 , HOH A:829 , HOH A:1201 , HOH A:1579BINDING SITE FOR RESIDUE NAG A 303
03AC3SOFTWAREGLN A:282 , HOH A:343 , HOH A:359 , THR C:117 , ALA C:118 , HOH C:644BINDING SITE FOR RESIDUE MPD A 304
04AC4SOFTWAREHOH B:762BINDING SITE FOR RESIDUE MPD A 305
05AC5SOFTWAREPHE A:17 , VAL A:216BINDING SITE FOR RESIDUE MPD A 306
06AC6SOFTWAREASP A:251 , HOH A:491 , HOH A:560 , HOH A:929 , ASN B:42 , ALA B:48BINDING SITE FOR RESIDUE MRD A 307
07AC7SOFTWAREGLN A:189 , HIS A:243 , CYS A:244BINDING SITE FOR RESIDUE K A 308
08AC8SOFTWAREASN B:113 , TYR B:137 , GLY B:141 , ASP B:145 , ASN B:174 , LEU B:175 , ASN B:178 , HIS B:180BINDING SITE FOR RESIDUE NAG B 302
09AC9SOFTWARELEU B:110 , ASN B:134 , ASN B:138 , HOH B:757 , HOH B:942 , HOH B:1342 , HOH B:1503 , HOH B:1775BINDING SITE FOR RESIDUE NAG B 303
10BC1SOFTWAREHIS B:9 , HOH B:492BINDING SITE FOR RESIDUE MPD B 304
11BC2SOFTWAREGLN A:12 , HOH A:793 , HOH A:1008 , GLN B:12 , HOH B:325 , HOH B:869 , GLN C:12 , HOH C:359BINDING SITE FOR RESIDUE MPD B 305
12BC3SOFTWAREARG B:228 , ASP B:251 , HOH B:753 , HOH B:1327 , ASN C:42 , ALA C:48 , PRO C:51BINDING SITE FOR RESIDUE MRD B 306
13BC4SOFTWAREGLN B:189 , HIS B:243 , CYS B:244 , HOH B:371BINDING SITE FOR RESIDUE K B 307
14BC5SOFTWAREARG A:99 , TRP A:238 , HOH A:1936 , ASN C:113 , TYR C:137 , GLY C:141 , ASP C:145 , ASN C:174 , LEU C:175 , ASN C:178 , HIS C:180 , HOH C:944 , HOH C:1730BINDING SITE FOR RESIDUE NAG C 302
15BC6SOFTWARELEU C:110 , ALA C:112 , ASN C:134 , ASN C:138 , HOH C:546 , HOH C:860 , HOH C:970 , HOH C:1491 , HOH C:1623BINDING SITE FOR RESIDUE NAG C 303
16BC7SOFTWAREASN A:42 , ALA A:48 , PRO A:51 , ARG C:228 , ASP C:251 , HOH C:469 , HOH C:1136BINDING SITE FOR RESIDUE MPD C 304
17BC8SOFTWAREHOH A:812 , HIS C:9 , HOH C:1774BINDING SITE FOR RESIDUE MPD C 305
18BC9SOFTWAREHOH C:329 , PHE D:38 , GLU E:54 , ILE E:56BINDING SITE FOR RESIDUE MPD C 306
19CC1SOFTWAREGLN C:189 , HIS C:243 , CYS C:244 , HOH C:333BINDING SITE FOR RESIDUE K C 307
20CC2SOFTWAREGLN B:102 , TRP B:238 , ASP B:239 , ASN D:113 , TYR D:137 , GLY D:141 , ASP D:145 , ASN D:174 , LEU D:175 , ASN D:178 , HIS D:180BINDING SITE FOR RESIDUE NAG D 302
21CC3SOFTWARELEU D:110 , ILE D:130 , ASN D:134 , ASN D:138BINDING SITE FOR RESIDUE NAG D 303
22CC4SOFTWAREGLN D:12 , HOH D:326 , GLN E:12 , HOH E:367 , HOH E:503 , HOH E:1439 , GLN F:12 , HOH F:322BINDING SITE FOR RESIDUE MPD D 304
23CC5SOFTWAREILE C:286 , GLY C:297 , HOH C:1379 , LEU D:91 , GLU D:92 , HOH D:930 , HOH D:959BINDING SITE FOR RESIDUE MRD D 305
24CC6SOFTWAREHIS D:9 , HOH E:561BINDING SITE FOR RESIDUE MPD D 306
25CC7SOFTWAREGLN D:189 , HIS D:243 , CYS D:244 , HOH D:444BINDING SITE FOR RESIDUE K D 307
26CC8SOFTWAREGLN C:102 , TRP C:238 , ASP C:239 , ASN E:113 , TYR E:137 , GLY E:141 , ASP E:145 , ASN E:174 , LEU E:175 , ASN E:178 , HIS E:180 , HOH E:994BINDING SITE FOR RESIDUE NAG E 302
27CC9SOFTWAREMET C:101 , HOH C:1443 , LEU E:110 , ALA E:112 , ILE E:130 , ASN E:134 , ASN E:138BINDING SITE FOR RESIDUE NAG E 303
28DC1SOFTWAREGLY B:297 , HOH B:1190 , HOH B:1367 , HOH B:1375 , HOH E:395 , HOH E:847 , HOH E:952BINDING SITE FOR RESIDUE MPD E 304
29DC2SOFTWAREHOH F:695BINDING SITE FOR RESIDUE MPD E 305
30DC3SOFTWAREGLN E:189 , HIS E:243 , CYS E:244 , HOH E:541BINDING SITE FOR RESIDUE K E 306
31DC4SOFTWAREASN F:113 , TYR F:137 , GLY F:141 , ASP F:145 , ASN F:174 , LEU F:175 , ASN F:178 , HIS F:180BINDING SITE FOR RESIDUE NAG F 302
32DC5SOFTWAREGLN B:208 , ASP B:212 , HOH B:356 , LEU F:110 , ASN F:134 , ASN F:138BINDING SITE FOR RESIDUE NAG F 303
33DC6SOFTWAREHOH D:633 , HIS F:9BINDING SITE FOR RESIDUE MRD F 304
34DC7SOFTWAREHOH A:1117 , ILE F:286 , GLY F:297 , HOH F:339 , HOH F:1169 , HOH F:1305BINDING SITE FOR RESIDUE MPD F 305
35DC8SOFTWAREGLN F:189 , HIS F:243 , CYS F:244 , HOH F:470BINDING SITE FOR RESIDUE K F 306
36DC9SOFTWAREASN G:113 , TYR G:137 , GLY G:141 , ASP G:145 , ASN G:174 , LEU G:175 , ASN G:178 , HIS G:180BINDING SITE FOR RESIDUE NAG G 302
37EC1SOFTWAREGLN E:102 , LEU G:110 , ILE G:130 , ASN G:134BINDING SITE FOR RESIDUE NAG G 303
38EC2SOFTWAREGLN G:189 , HIS G:243 , CYS G:244 , HOH G:1277BINDING SITE FOR RESIDUE K G 304

(-) SS Bonds  (28, 28)

Asymmetric Unit
No.Residues
1A:30 -A:299
2A:43 -A:47
3A:120 -A:123
4A:265 -A:273
5B:30 -B:299
6B:43 -B:47
7B:120 -B:123
8B:265 -B:273
9C:30 -C:299
10C:43 -C:47
11C:120 -C:123
12C:265 -C:273
13D:30 -D:299
14D:43 -D:47
15D:120 -D:123
16D:265 -D:273
17E:30 -E:299
18E:43 -E:47
19E:120 -E:123
20E:265 -E:273
21F:30 -F:299
22F:43 -F:47
23F:120 -F:123
24F:265 -F:273
25G:30 -G:299
26G:43 -G:47
27G:120 -G:123
28G:265 -G:273

(-) Cis Peptide Bonds  (14, 14)

Asymmetric Unit
No.Residues
1Lys A:39 -Pro A:40
2Val A:235 -Pro A:236
3Lys B:39 -Pro B:40
4Val B:235 -Pro B:236
5Lys C:39 -Pro C:40
6Val C:235 -Pro C:236
7Lys D:39 -Pro D:40
8Val D:235 -Pro D:236
9Lys E:39 -Pro E:40
10Val E:235 -Pro E:236
11Lys F:39 -Pro F:40
12Val F:235 -Pro F:236
13Lys G:39 -Pro G:40
14Val G:235 -Pro G:236

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3O0D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3O0D)

(-) Exons   (0, 0)

(no "Exon" information available for 3O0D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:301
 aligned with Q9P8F7_YARLL | Q9P8F7 from UniProtKB/TrEMBL  Length:334

    Alignment length:301
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333 
         Q9P8F7_YARLL    34 VYTSTETSHIDQESYNFFEKYARLANIGYCVGPGTKIFKPFNCGLQCAHFPNVELIEEFHDPRLIFDVSGYLAVDHASKQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQSYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPLVVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVPFWDGYQHCSGEVFIDWPLIHPPLSNVVMCQGQSNKQCSAGNTLLQQVNVIGNHLQYFVTEGVCGI 334
               SCOP domains d3o0da_ A: automated matches                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..ee..hhhhhhhhhhhhhhhhhhhhh..............hhhhh..eeeeeeee.......eeeeeeee....eeeeeeee..hhhhhhhhhhhh...eee.hhh............eeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhh..............eeeeee...hhhhh...........eeee.......hhh.eeee...ee..hhhhh......hhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o0d A   1 VYTSTETSHIDQESYNFFEKYARLANIGYCVGPGTKIFKPFNCGLQCAHFPNVELIEEFHDPRLIFDVSGYLAVDHASKQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQSYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPLVVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVPFWDGYQHCSGEVFIDWPLIHPPLSNVVMCQGQSNKQCSAGNTLLQQVNVIGNHLQYFVTEGVCGI 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 

Chain B from PDB  Type:PROTEIN  Length:301
 aligned with Q9P8F7_YARLL | Q9P8F7 from UniProtKB/TrEMBL  Length:334

    Alignment length:301
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333 
         Q9P8F7_YARLL    34 VYTSTETSHIDQESYNFFEKYARLANIGYCVGPGTKIFKPFNCGLQCAHFPNVELIEEFHDPRLIFDVSGYLAVDHASKQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQSYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPLVVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVPFWDGYQHCSGEVFIDWPLIHPPLSNVVMCQGQSNKQCSAGNTLLQQVNVIGNHLQYFVTEGVCGI 334
               SCOP domains d3o0db_ B: automated matches                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..eee.hhhhhhhhhhhhhhhhhhhhh..............hhhhh..eeeeeeee.......eeeeeeee....eeeeeeee..hhhhhhhhhhhh...eee.hhh............eeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhh..............eeeeee...hhhhh...........eeee.......hhh.eeee...ee..hhhhh......hhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o0d B   1 VYTSTETSHIDQESYNFFEKYARLANIGYCVGPGTKIFKPFNCGLQCAHFPNVELIEEFHDPRLIFDVSGYLAVDHASKQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQSYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPLVVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVPFWDGYQHCSGEVFIDWPLIHPPLSNVVMCQGQSNKQCSAGNTLLQQVNVIGNHLQYFVTEGVCGI 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 

Chain C from PDB  Type:PROTEIN  Length:301
 aligned with Q9P8F7_YARLL | Q9P8F7 from UniProtKB/TrEMBL  Length:334

    Alignment length:301
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333 
         Q9P8F7_YARLL    34 VYTSTETSHIDQESYNFFEKYARLANIGYCVGPGTKIFKPFNCGLQCAHFPNVELIEEFHDPRLIFDVSGYLAVDHASKQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQSYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPLVVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVPFWDGYQHCSGEVFIDWPLIHPPLSNVVMCQGQSNKQCSAGNTLLQQVNVIGNHLQYFVTEGVCGI 334
               SCOP domains d3o0dc_ C: automated matches                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..eee.hhhhhhhhhhhhhhhhhhhhh..............hhhhh..eeeeeeee.......eeeeeeee....eeeeeeee..hhhhhhhhhhhh...eee.hhh............eeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhh..............eeeeee...hhhhh...........eeee.......hhh.eeee...ee..hhhhh......hhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o0d C   1 VYTSTETSHIDQESYNFFEKYARLANIGYCVGPGTKIFKPFNCGLQCAHFPNVELIEEFHDPRLIFDVSGYLAVDHASKQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQSYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPLVVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVPFWDGYQHCSGEVFIDWPLIHPPLSNVVMCQGQSNKQCSAGNTLLQQVNVIGNHLQYFVTEGVCGI 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 

Chain D from PDB  Type:PROTEIN  Length:297
 aligned with Q9P8F7_YARLL | Q9P8F7 from UniProtKB/TrEMBL  Length:334

    Alignment length:301
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333 
         Q9P8F7_YARLL    34 VYTSTETSHIDQESYNFFEKYARLANIGYCVGPGTKIFKPFNCGLQCAHFPNVELIEEFHDPRLIFDVSGYLAVDHASKQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQSYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPLVVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVPFWDGYQHCSGEVFIDWPLIHPPLSNVVMCQGQSNKQCSAGNTLLQQVNVIGNHLQYFVTEGVCGI 334
               SCOP domains d3o0dd_ D: automated matches                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..eee.hhhhhhhhhhhhhhhhhhhhh..............hhhhh..eeeeeeee.......eeeeeeee....eeeeeeee..hhhhhhhhhhh----.ee.hhh............eehhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhhh....eeeee.....eehhhhhhhhhhhhh..............eeeeee...hhhhh.....ee....eeee.......hhh.eeee...ee..hhhhh......hhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o0d D   1 VYTSTETSHIDQESYNFFEKYARLANIGYCVGPGTKIFKPFNCGLQCAHFPNVELIEEFHDPRLIFDVSGYLAVDHASKQIYLVIRGTHSLEDVITDIRI----LTNFDLAANISSTATCDDCLVHNGFIQSYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPLVVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVPFWDGYQHCSGEVFIDWPLIHPPLSNVVMCQGQSNKQCSAGNTLLQQVNVIGNHLQYFVTEGVCGI 301
                                    10        20        30        40        50        60        70        80        90       100    |  110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 
                                                                                                                             100  105                                                                                                                                                                                                    

Chain E from PDB  Type:PROTEIN  Length:301
 aligned with Q9P8F7_YARLL | Q9P8F7 from UniProtKB/TrEMBL  Length:334

    Alignment length:301
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333 
         Q9P8F7_YARLL    34 VYTSTETSHIDQESYNFFEKYARLANIGYCVGPGTKIFKPFNCGLQCAHFPNVELIEEFHDPRLIFDVSGYLAVDHASKQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQSYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPLVVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVPFWDGYQHCSGEVFIDWPLIHPPLSNVVMCQGQSNKQCSAGNTLLQQVNVIGNHLQYFVTEGVCGI 334
               SCOP domains d3o0de_ E: automated matches                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..eee.hhhhhhhhhhhhhhhhhhhhh..............hhhhh..eeeeeeee.......eeeeeeee....eeeeeeee..hhhhhhhhhhhh...eee.hhh............eeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhhh....eeeee.....eehhhhhhhhhhhhh..............eeeeee...hhhhh.....ee....eeee.......hhh.eeee...ee..hhhhh......hhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o0d E   1 VYTSTETSHIDQESYNFFEKYARLANIGYCVGPGTKIFKPFNCGLQCAHFPNVELIEEFHDPRLIFDVSGYLAVDHASKQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQSYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPLVVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVPFWDGYQHCSGEVFIDWPLIHPPLSNVVMCQGQSNKQCSAGNTLLQQVNVIGNHLQYFVTEGVCGI 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 

Chain F from PDB  Type:PROTEIN  Length:298
 aligned with Q9P8F7_YARLL | Q9P8F7 from UniProtKB/TrEMBL  Length:334

    Alignment length:301
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333 
         Q9P8F7_YARLL    34 VYTSTETSHIDQESYNFFEKYARLANIGYCVGPGTKIFKPFNCGLQCAHFPNVELIEEFHDPRLIFDVSGYLAVDHASKQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQSYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPLVVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVPFWDGYQHCSGEVFIDWPLIHPPLSNVVMCQGQSNKQCSAGNTLLQQVNVIGNHLQYFVTEGVCGI 334
               SCOP domains d3o0df_ F: automated matches                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..eee.hhhhhhhhhhhhhhhhhhhhh..............hhhhh..eeeeeeee.......eeeeeeee....eeeeeeee..hhhhhhhhhh---..eee.hhh............eeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhh..............eeeeee...hhhhh...........eeee.......hhh.eeee...ee..hhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3o0d F   1 VYTSTETSHIDQESYNFFEKYARLANIGYCVGPGTKIFKPFNCGLQCAHFPNVELIEEFHDPRLIFDVSGYLAVDHASKQIYLVIRGTHSLEDVITDIR---APLTNFDLAANISSTATCDDCLVHNGFIQSYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPLVVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVPFWDGYQHCSGEVFIDWPLIHPPLSNVVMCQGQSNKQCSAGNTLLQQVNVIGNHLQYFVTEGVCGI 301
                                    10        20        30        40        50        60        70        80        90        |-  |    110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300 
                                                                                                                             99 103                                                                                                                                                                                                      

Chain G from PDB  Type:PROTEIN  Length:296
 aligned with Q9P8F7_YARLL | Q9P8F7 from UniProtKB/TrEMBL  Length:334

    Alignment length:300
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333
         Q9P8F7_YARLL    34 VYTSTETSHIDQESYNFFEKYARLANIGYCVGPGTKIFKPFNCGLQCAHFPNVELIEEFHDPRLIFDVSGYLAVDHASKQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQSYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPLVVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVPFWDGYQHCSGEVFIDWPLIHPPLSNVVMCQGQSNKQCSAGNTLLQQVNVIGNHLQYFVTEGVCG 333
               SCOP domains d3o0dg_ G: automated matches                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) Lipase3_N-3o0dG08 G:1-58                                  -----------------------Lipase_3-3o0dG01 G:82-240                                                                                                                                      ------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) Lipase3_N-3o0dG09 G:1-58                                  -----------------------Lipase_3-3o0dG02 G:82-240                                                                                                                                      ------------------------------------------------------------ Pfam domains (2)
           Pfam domains (3) Lipase3_N-3o0dG10 G:1-58                                  -----------------------Lipase_3-3o0dG03 G:82-240                                                                                                                                      ------------------------------------------------------------ Pfam domains (3)
           Pfam domains (4) Lipase3_N-3o0dG11 G:1-58                                  -----------------------Lipase_3-3o0dG04 G:82-240                                                                                                                                      ------------------------------------------------------------ Pfam domains (4)
           Pfam domains (5) Lipase3_N-3o0dG12 G:1-58                                  -----------------------Lipase_3-3o0dG05 G:82-240                                                                                                                                      ------------------------------------------------------------ Pfam domains (5)
           Pfam domains (6) Lipase3_N-3o0dG13 G:1-58                                  -----------------------Lipase_3-3o0dG06 G:82-240                                                                                                                                      ------------------------------------------------------------ Pfam domains (6)
           Pfam domains (7) Lipase3_N-3o0dG14 G:1-58                                  -----------------------Lipase_3-3o0dG07 G:82-240                                                                                                                                      ------------------------------------------------------------ Pfam domains (7)
         Sec.struct. author ..ee..eee.hhhhhhhhhhhhhhhhhhhhh..............hhhhh..eeeeeee........eeeeeeee....eeeeeeee..hhhhhh.hhhhh...eee.hhh............eeehhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeehhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhh..............eeeeee...hhhhh...........eeee.......hhh.eeee...ee..hhhhh..----hhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3o0d G   1 VYTSTETSHIDQESYNFFEKYARLANIGYCVGPGTKIFKPFNCGLQCAHFPNVELIEEFHDPRLIFDVSGYLAVDHASKQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQSYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLKVNGHDPLVVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQVPFWDGYQHCSGEVFIDWPLIHPPLSNVVMCQGQSNKQCSAGNTL----NVIGNHLQYFVTEGVCG 300
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270        |-   |   290       300
                                                                                                                                                                                                                                                                                                                279  284                

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 7)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3O0D)

(-) Pfam Domains  (2, 14)

Asymmetric Unit

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G   (Q9P8F7_YARLL | Q9P8F7)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0004806    triglyceride lipase activity    Catalysis of the reaction: triacylglycerol + H2O = diacylglycerol + a carboxylate.
biological process
    GO:0016042    lipid catabolic process    The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.

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