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(-) Description

Title :  STRUCTURE AND ALLOSTERIC REGULATION OF THE URIDINE MONOPHOSPHATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS
 
Authors :  G. Labesse, H. Munier-Lehmann
Date :  12 Jul 10  (Deposition) - 25 Aug 10  (Release) - 18 May 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.54
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Allosterically Activated Form, Aak Fold, Ump Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Labesse, K. Benkali, I. Salard-Arnaud, A. M. Gilles, H. Munier-Lehmann
Structural And Functional Characterization Of The Mycobacterium Tuberculosis Uridine Monophosphate Kinase: Insights Into The Allosteric Regulation.
Nucleic Acids Res. V. 39 3458 2011
PubMed-ID: 21149268  |  Reference-DOI: 10.1093/NAR/GKQ1250

(-) Compounds

Molecule 1 - URIDYLATE KINASE
    Chains: A, B, C, D, E, F
    EC Number: 2.7.4.22
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MT2951, MTCY274.14C, PYRH, RV2883C
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: H37RV
    Synonym: UK, URIDINE MONOPHOSPHATE KINASE, UMP KINASE, UMPK

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1GTP6Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
2UDP1Ligand/IonURIDINE-5'-DIPHOSPHATE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:123 , GLY A:131 , GLN A:132 , ALA A:134 , GLU A:135 , PRO A:136 , ARG A:141 , HIS A:145 , LYS A:148 , ARG A:150 , HOH A:270 , HOH A:505 , LEU D:138 , LEU D:140 , ARG D:141 , ARG D:144BINDING SITE FOR RESIDUE GTP A 262
2AC2SOFTWAREARG B:123 , GLY B:131 , GLN B:132 , ALA B:134 , GLU B:135 , PRO B:136 , ARG B:141 , LYS B:148 , ARG B:150 , LEU C:138 , LEU C:140 , ARG C:141 , ARG C:144BINDING SITE FOR RESIDUE GTP B 262
3AC3SOFTWARELYS B:36 , GLY B:39 , GLU B:40 , GLY B:76 , GLY B:77 , GLY B:78 , PHE B:81 , ARG B:82 , GLY B:83 , ASP B:97 , GLY B:100 , MET B:101 , GLY B:157 , MET B:158 , LEU B:160 , PHE B:163 , THR B:165 , THR B:168 , HOH B:267BINDING SITE FOR RESIDUE UDP B 263
4AC4SOFTWAREARG C:123 , GLY C:131 , GLN C:132 , ALA C:134 , GLU C:135 , PRO C:136 , ARG C:141 , LYS C:148 , ARG C:150 , HOH C:552 , LEU E:138 , ARG E:141 , ARG E:144BINDING SITE FOR RESIDUE GTP C 262
5AC5SOFTWAREARG D:123 , GLY D:131 , GLN D:132 , ALA D:134 , PRO D:136 , LYS D:148 , ARG D:150 , LEU F:140 , ARG F:141BINDING SITE FOR RESIDUE GTP D 262
6AC6SOFTWARELEU B:140 , ARG B:141 , ARG B:144 , LYS B:148 , ARG E:123 , GLY E:131 , GLN E:132 , ALA E:134 , GLU E:135 , PRO E:136 , LYS E:148 , ARG E:150BINDING SITE FOR RESIDUE GTP E 262
7AC7SOFTWARELEU A:140 , ARG A:141 , ARG F:123 , GLY F:131 , GLN F:132 , ALA F:134 , GLU F:135 , PRO F:136 , ARG F:141 , ARG F:150BINDING SITE FOR RESIDUE GTP F 262

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NWY)

(-) Cis Peptide Bonds  (21, 21)

Asymmetric/Biological Unit
No.Residues
1Gly A:44 -Gly A:45
2Pro A:199 -Glu A:200
3Arg A:215 -Gly A:216
4Thr A:260 -Thr A:261
5Phe B:42 -Gly B:43
6Gly B:44 -Gly B:45
7Arg B:82 -Gly B:83
8Gly B:83 -Ala B:84
9Ala B:201 -Glu B:202
10Arg B:218 -Val B:219
11Arg C:82 -Gly C:83
12Gly C:83 -Ala C:84
13Ala C:84 -Gln C:85
14Arg C:215 -Gly C:216
15Gly D:44 -Gly D:45
16Ala D:201 -Glu D:202
17Gly E:44 -Gly E:45
18Gly F:45 -Gln F:46
19Ala F:192 -Glu F:193
20Arg F:215 -Gly F:216
21Lys F:254 -Ile F:255

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NWY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NWY)

(-) Exons   (0, 0)

(no "Exon" information available for 3NWY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:227
 aligned with PYRH_MYCTO | P9WHK4 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:235
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256     
           PYRH_MYCTO    27 LSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
               SCOP domains d3nwya_ A: automated matches                                                                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeehhhhhhh.....hhhhhhhhhhhhhhhhhh..eeeeee.....---........hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhee.hhhhhhhhhhh..eeeee........hhhhhhhhhhhhh...eeeeee........-----.......eehhhhhhh......hhhhhhhhhh....eeeee....hhhhhhhhh....eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwy A  27 LSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNF---AQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAE-----PEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
                                    36        46        56        66        76   |   |86        96       106       116       126       136       146       156       166       176       186      |  -  |    206       216       226       236       246       256     
                                                                                80  84                                                                                                          193   199                                                              


Chain A from PDB  Type:PROTEIN  Length:227
 aligned with PYRH_MYCTU | P9WHK5 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:235
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256     
           PYRH_MYCTU    27 LSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
               SCOP domains d3nwya_ A: automated matches                                                                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeehhhhhhh.....hhhhhhhhhhhhhhhhhh..eeeeee.....---........hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhee.hhhhhhhhhhh..eeeee........hhhhhhhhhhhhh...eeeeee........-----.......eehhhhhhh......hhhhhhhhhh....eeeee....hhhhhhhhh....eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwy A  27 LSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNF---AQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAE-----PEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
                                    36        46        56        66        76   |   |86        96       106       116       126       136       146       156       166       176       186      |  -  |    206       216       226       236       246       256     
                                                                                80  84                                                                                                          193   199                                                              


Chain B from PDB  Type:PROTEIN  Length:231
 aligned with PYRH_MYCTO | P9WHK4 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:236
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255      
           PYRH_MYCTO    26 QLSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
               SCOP domains d3nwyb_ B: automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee............hhhhhhhhhhhhhhhhhh..eeeeee........hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee........ee.hhhhhhhhhhh..eeeee........hhhhhhhhhhhhhh..eeeeee....ee....-----..ee.eeehhhhhhh.....hhhhhhhhhhh...eeeee....hhhhhhhh.....eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwy B  26 QLSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDP-----AELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195     | 205       215       225       235       245       255      
                                                                                                                                                                                                   195   201                                                            


Chain B from PDB  Type:PROTEIN  Length:231
 aligned with PYRH_MYCTU | P9WHK5 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:236
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255      
           PYRH_MYCTU    26 QLSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
               SCOP domains d3nwyb_ B: automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee............hhhhhhhhhhhhhhhhhh..eeeeee........hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee........ee.hhhhhhhhhhh..eeeee........hhhhhhhhhhhhhh..eeeeee....ee....-----..ee.eeehhhhhhh.....hhhhhhhhhhh...eeeee....hhhhhhhh.....eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwy B  26 QLSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDP-----AELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195     | 205       215       225       235       245       255      
                                                                                                                                                                                                   195   201                                                            


Chain C from PDB  Type:PROTEIN  Length:230
 aligned with PYRH_MYCTO | P9WHK4 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:234
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257    
           PYRH_MYCTO    28 SGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
               SCOP domains d3nwyc_ C: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeehhhhhhh.....hhhhhhhhhhhhhhhhhh..eeeeee.hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee........ee.hhhhhhhhhh...eeeee........hhhhhhhhhhhhh...eeeeee....ee.....----..ee.eeehhhhhh......hhhhhhhhhhhh..eeeee....hhhhhhhh.....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3nwy C  28 SGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPR----AELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187        |-   |   207       217       227       237       247       257    
                                                                                                                                                                                                  196  201                                                            


Chain C from PDB  Type:PROTEIN  Length:230
 aligned with PYRH_MYCTU | P9WHK5 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:234
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257    
           PYRH_MYCTU    28 SGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
               SCOP domains d3nwyc_ C: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeehhhhhhh.....hhhhhhhhhhhhhhhhhh..eeeeee.hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee........ee.hhhhhhhhhh...eeeee........hhhhhhhhhhhhh...eeeeee....ee.....----..ee.eeehhhhhh......hhhhhhhhhhhh..eeeee....hhhhhhhh.....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3nwy C  28 SGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPR----AELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187        |-   |   207       217       227       237       247       257    
                                                                                                                                                                                                  196  201                                                            


Chain D from PDB  Type:PROTEIN  Length:230
 aligned with PYRH_MYCTO | P9WHK4 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:234
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257    
           PYRH_MYCTO    28 SGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
               SCOP domains d3nwyd_ D: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeehhhhhhh.....hhhhhhhhhhhhhhhhhh..eeeeee.....----.hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee........ee.hhhhhhhhhhh..eeeee........hhhhhhhhhhhhh...eeeee.....................eehhhhhhh......hhhhhhhhhhh...eeee.....hhhhhhhhh....eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3nwy D  28 SGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNF----QLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
                                    37        47        57        67        77  |    |87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257    
                                                                               80   85                                                                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:230
 aligned with PYRH_MYCTU | P9WHK5 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:234
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257    
           PYRH_MYCTU    28 SGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
               SCOP domains d3nwyd_ D: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeehhhhhhh.....hhhhhhhhhhhhhhhhhh..eeeeee.....----.hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee........ee.hhhhhhhhhhh..eeeee........hhhhhhhhhhhhh...eeeee.....................eehhhhhhh......hhhhhhhhhhh...eeee.....hhhhhhhhh....eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3nwy D  28 SGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNF----QLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
                                    37        47        57        67        77  |    |87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257    
                                                                               80   85                                                                                                                                                                                


Chain E from PDB  Type:PROTEIN  Length:220
 aligned with PYRH_MYCTO | P9WHK4 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:234
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257    
           PYRH_MYCTO    28 SGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
               SCOP domains d3nwye_ E: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeehhhhh.......hhhhhhhhhhhhhhhhhh..eeeeee.hhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhee.hhhhhhhhhhh..eeeee........hhhhhhhhhhhhh...eeeeee.....-------------....hhhhhhhhh..-.hhhhhhhhhh....eeeee....hhhhhhh......ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3nwy E  28 SGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGV-------------LTAVSHREVLDRGLR-ADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187  |      -      |207       217| |    227       237       247       257    
                                                                                                                                                                                            190           204           218 |                                         
                                                                                                                                                                                                                          220                                         


Chain E from PDB  Type:PROTEIN  Length:220
 aligned with PYRH_MYCTU | P9WHK5 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:234
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257    
           PYRH_MYCTU    28 SGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
               SCOP domains d3nwye_ E: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeehhhhh.......hhhhhhhhhhhhhhhhhh..eeeeee.hhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhee.hhhhhhhhhhh..eeeee........hhhhhhhhhhhhh...eeeeee.....-------------....hhhhhhhhh..-.hhhhhhhhhh....eeeee....hhhhhhh......ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3nwy E  28 SGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGV-------------LTAVSHREVLDRGLR-ADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187  |      -      |207       217| |    227       237       247       257    
                                                                                                                                                                                            190           204           218 |                                         
                                                                                                                                                                                                                          220                                         


Chain F from PDB  Type:PROTEIN  Length:226
 aligned with PYRH_MYCTO | P9WHK4 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:233
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258   
           PYRH_MYCTO    29 GYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
               SCOP domains d3nwyf_ F: automated matches                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --AA_kinase-3nwyF01 F:31-239                                                                                                                                                                                       ---------------------- Pfam domains (1)
           Pfam domains (2) --AA_kinase-3nwyF02 F:31-239                                                                                                                                                                                       ---------------------- Pfam domains (2)
           Pfam domains (3) --AA_kinase-3nwyF03 F:31-239                                                                                                                                                                                       ---------------------- Pfam domains (3)
           Pfam domains (4) --AA_kinase-3nwyF04 F:31-239                                                                                                                                                                                       ---------------------- Pfam domains (4)
           Pfam domains (5) --AA_kinase-3nwyF05 F:31-239                                                                                                                                                                                       ---------------------- Pfam domains (5)
           Pfam domains (6) --AA_kinase-3nwyF06 F:31-239                                                                                                                                                                                       ---------------------- Pfam domains (6)
         Sec.struct. author ...eeeeee.hhhhhh.....hhhhhhhhhhhhhhhhhh..eeeeee.hhhhh..hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee........ee.hhhhhhhhhhh..eeeee........hhhhhhhhhhhhh...eeeeee.........-------....eehhhhhhhh.....hhhhhhhhhhh...eeeee....hhhhhhhh.....eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwy F  29 GYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAED-------ELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188     |   -   |   208       218       228       238       248       258   
                                                                                                                                                                                               194     202                                                           


Chain F from PDB  Type:PROTEIN  Length:226
 aligned with PYRH_MYCTU | P9WHK5 from UniProtKB/Swiss-Prot  Length:261

    Alignment length:233
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258   
           PYRH_MYCTU    29 GYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
               SCOP domains d3nwyf_ F: automated matches                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --AA_kinase-3nwyF01 F:31-239                                                                                                                                                                                       ---------------------- Pfam domains (1)
           Pfam domains (2) --AA_kinase-3nwyF02 F:31-239                                                                                                                                                                                       ---------------------- Pfam domains (2)
           Pfam domains (3) --AA_kinase-3nwyF03 F:31-239                                                                                                                                                                                       ---------------------- Pfam domains (3)
           Pfam domains (4) --AA_kinase-3nwyF04 F:31-239                                                                                                                                                                                       ---------------------- Pfam domains (4)
           Pfam domains (5) --AA_kinase-3nwyF05 F:31-239                                                                                                                                                                                       ---------------------- Pfam domains (5)
           Pfam domains (6) --AA_kinase-3nwyF06 F:31-239                                                                                                                                                                                       ---------------------- Pfam domains (6)
         Sec.struct. author ...eeeeee.hhhhhh.....hhhhhhhhhhhhhhhhhh..eeeeee.hhhhh..hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee........ee.hhhhhhhhhhh..eeeee........hhhhhhhhhhhhh...eeeeee.........-------....eehhhhhhhh.....hhhhhhhhhhh...eeeee....hhhhhhhh.....eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nwy F  29 GYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAED-------ELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT 261
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188     |   -   |   208       218       228       238       248       258   
                                                                                                                                                                                               194     202
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NWY)

(-) Pfam Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: AA_kinase] (20)

(-) Gene Ontology  (15, 26)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (PYRH_MYCTU | P9WHK5)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0033862    UMP kinase activity    Catalysis of the reaction: ATP + UMP = ADP + UDP.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0009041    uridylate kinase activity    Catalysis of the reaction: ATP + (d)UMP = ADP + (d)UDP.
biological process
    GO:0044210    'de novo' CTP biosynthetic process    The chemical reactions and pathways resulting in the formation of cytidine 5'-triphosphate (CTP) from simpler components.
    GO:0006225    UDP biosynthetic process    The chemical reactions and pathways resulting in the formation of UDP, uridine (5'-)diphosphate.
    GO:0040007    growth    The increase in size or mass of an entire organism, a part of an organism or a cell.
    GO:0046939    nucleotide phosphorylation    The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006221    pyrimidine nucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,B,C,D,E,F   (PYRH_MYCTO | P9WHK4)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0033862    UMP kinase activity    Catalysis of the reaction: ATP + UMP = ADP + UDP.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0009041    uridylate kinase activity    Catalysis of the reaction: ATP + (d)UMP = ADP + (d)UDP.
biological process
    GO:0044210    'de novo' CTP biosynthetic process    The chemical reactions and pathways resulting in the formation of cytidine 5'-triphosphate (CTP) from simpler components.
    GO:0046939    nucleotide phosphorylation    The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006221    pyrimidine nucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  3nwy
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  PYRH_MYCTU | P9WHK5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3NWY)

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(no "Related Entries Specified in the PDB File" available for 3NWY)