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(-) Description

Title :  CRYSTAL STRUCTURE OF OMPF, AN OUTER MEMBRANE PROTEIN FROM SALMONELLA TYPHI
 
Authors :  D. Balasubramaniam, A. Arockiasamy, A. Sharma, S. Krishnaswamy
Date :  01 Jul 10  (Deposition) - 13 Jul 11  (Release) - 20 Jun 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.79
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Porin, Beta Barrel, Outer Membrane Protein, Beta Barrel Membrane Protein, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Balasubramaniam, A. Arockiasamy, P. D. Kumar, A. Sharma, S. Krishnaswamy
Asymmetric Pore Occupancy In Crystal Structure Of Ompf Pori From Salmonella Typhi
J. Struct. Biol. V. 178 233 2012
PubMed-ID: 22525817  |  Reference-DOI: 10.1016/J.JSB.2012.04.005

(-) Compounds

Molecule 1 - OUTER MEMBRANE PROTEIN F
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET20B+
    Expression System Strain: B834(DE3)/PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: OMPF
    Organism Scientific: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHI
    Organism Taxid: 527001
    Strain: TY21A
    Synonym: PORIN OMPF, OUTER MEMBRANE PROTEIN 1A, OUTER MEMBRANE PROTEIN IA, OUTER MEMBRANE PROTEIN B

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 168)

Asymmetric/Biological Unit (7, 168)
No.NameCountTypeFull Name
1FLC4Ligand/IonCITRATE ANION
2GOL38Ligand/IonGLYCEROL
3LDA17Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
4MSE21Mod. Amino AcidSELENOMETHIONINE
5SO480Ligand/IonSULFATE ION
6TAM6Ligand/IonTRIS(HYDROXYETHYL)AMINOMETHANE
7TLA2Ligand/IonL(+)-TARTARIC ACID

(-) Sites  (139, 139)

Asymmetric Unit (139, 139)
No.NameEvidenceResiduesDescription
001AC1SOFTWARESO4 A:343 , LDA A:388 , HOH A:404 , HOH A:419 , GOL C:379BINDING SITE FOR RESIDUE SO4 A 342
002AC2SOFTWARETRP A:23 , SO4 A:342 , LDA A:384BINDING SITE FOR RESIDUE SO4 A 343
003AC3SOFTWAREGOL A:371 , HOH A:417 , SO4 C:369BINDING SITE FOR RESIDUE SO4 A 344
004AC4SOFTWAREARG A:65 , ASN A:72BINDING SITE FOR RESIDUE SO4 A 345
005AC5SOFTWAREGLU A:44 , PHE A:54 , LYS A:84 , HOH A:420BINDING SITE FOR RESIDUE SO4 A 346
006AC6SOFTWAREHOH A:422BINDING SITE FOR RESIDUE SO4 A 347
007AC7SOFTWAREHOH A:429BINDING SITE FOR RESIDUE SO4 A 348
008AC8SOFTWARETYR A:85 , GLU A:87 , VAL A:88 , GLY A:89 , ASN A:139 , SER A:140 , ASP A:141BINDING SITE FOR RESIDUE SO4 A 349
009AC9SOFTWAREGLU A:87 , VAL A:88 , PHE A:143 , SO4 A:351 , SO4 A:352BINDING SITE FOR RESIDUE SO4 A 350
010BC1SOFTWAREGLU A:87 , PHE A:143 , LEU A:145 , SO4 A:350 , HOH A:430BINDING SITE FOR RESIDUE SO4 A 351
011BC2SOFTWAREPHE A:143 , SO4 A:350BINDING SITE FOR RESIDUE SO4 A 352
012BC3SOFTWARELEU A:83 , TYR A:85 , GLY A:89 , ILE A:91BINDING SITE FOR RESIDUE SO4 A 353
013BC4SOFTWAREALA A:110 , PRO A:111 , THR A:299 , TYR A:301 , HOH A:436 , HOH A:437 , HOH A:439 , HOH A:440BINDING SITE FOR RESIDUE SO4 A 354
014BC5SOFTWAREALA A:121 , TYR A:122 , TYR A:326BINDING SITE FOR RESIDUE SO4 A 355
015BC6SOFTWARETYR A:155 , LDA A:386 , HOH A:451BINDING SITE FOR RESIDUE SO4 A 357
016BC7SOFTWAREASN A:159 , ASP A:161 , HIS A:163 , HOH A:461 , ALA B:32 , ASP B:33BINDING SITE FOR RESIDUE SO4 A 358
017BC8SOFTWAREGOL A:376BINDING SITE FOR RESIDUE SO4 A 359
018BC9SOFTWAREASP A:147 , GLU A:180 , PHE A:181 , ASP A:182BINDING SITE FOR RESIDUE SO4 A 360
019CC1SOFTWAREASP A:207 , ARG A:208 , HOH A:480 , HOH A:486 , HOH A:488BINDING SITE FOR RESIDUE SO4 A 361
020CC2SOFTWARETYR A:261 , PRO A:269 , ILE A:271 , HOH A:499BINDING SITE FOR RESIDUE SO4 A 362
021CC3SOFTWAREARG A:233 , LYS A:251 , GLN A:280BINDING SITE FOR RESIDUE SO4 A 363
022CC4SOFTWAREGOL A:381 , GOL A:382BINDING SITE FOR RESIDUE SO4 A 364
023CC5SOFTWAREGLN A:262 , ASP A:264 , PHE A:265 , GLY A:266 , TYR A:301BINDING SITE FOR RESIDUE SO4 A 366
024CC6SOFTWAREMSE A:1 , GLU A:2 , LYS A:304 , HOH A:537 , SO4 C:368BINDING SITE FOR RESIDUE SO4 A 367
025CC7SOFTWARELYS A:16 , GLN A:38 , GLU A:58 , ARG A:77 , TAM A:390BINDING SITE FOR RESIDUE GOL A 370
026CC8SOFTWARESO4 A:344 , HOH A:418BINDING SITE FOR RESIDUE GOL A 371
027CC9SOFTWARELYS A:194 , HOH A:457BINDING SITE FOR RESIDUE GOL A 372
028DC1SOFTWAREGLN A:160 , ASN A:197 , HOH A:455 , HOH A:477BINDING SITE FOR RESIDUE GOL A 373
029DC2SOFTWAREASP A:161 , ASN A:162BINDING SITE FOR RESIDUE GOL A 374
030DC3SOFTWAREASP A:171 , ASN A:192 , SER A:193 , LYS A:194 , ARG A:208 , HOH A:466BINDING SITE FOR RESIDUE GOL A 375
031DC4SOFTWARESO4 A:359 , TLA A:393BINDING SITE FOR RESIDUE GOL A 376
032DC5SOFTWARETLA A:393 , HOH A:491BINDING SITE FOR RESIDUE GOL A 377
033DC6SOFTWARETAM A:391 , TLA A:393BINDING SITE FOR RESIDUE GOL A 378
034DC7SOFTWARETYR A:190BINDING SITE FOR RESIDUE GOL A 379
035DC8SOFTWARETYR A:261 , HOH A:495 , HOH A:500 , HOH A:508BINDING SITE FOR RESIDUE GOL A 380
036DC9SOFTWARESO4 A:364BINDING SITE FOR RESIDUE GOL A 381
037EC1SOFTWARETYR A:261 , PHE A:263 , SO4 A:364 , HOH A:510 , HOH A:511 , HOH A:512BINDING SITE FOR RESIDUE GOL A 382
038EC2SOFTWARELYS A:279 , LDA A:389 , HOH A:525BINDING SITE FOR RESIDUE GOL A 383
039EC3SOFTWAREHIS A:21 , TRP A:23 , ASN A:31 , ILE A:337 , SO4 A:343 , LEU C:83 , ILE C:91 , GLY C:157BINDING SITE FOR RESIDUE LDA A 384
040EC4SOFTWARELEU A:145 , LDA A:387BINDING SITE FOR RESIDUE LDA A 385
041EC5SOFTWAREILE A:91 , TYR A:93 , GLY A:157 , SO4 A:357 , HIS B:21 , TRP B:23BINDING SITE FOR RESIDUE LDA A 386
042EC6SOFTWARETYR A:179 , LDA A:385 , TYR B:155 , LDA B:375BINDING SITE FOR RESIDUE LDA A 387
043EC7SOFTWARETRP A:23 , THR A:24 , THR A:25 , SER A:29 , SO4 A:342BINDING SITE FOR RESIDUE LDA A 388
044EC8SOFTWAREGOL A:383BINDING SITE FOR RESIDUE LDA A 389
045EC9SOFTWAREARG A:20 , ARG A:60 , ARG A:77 , SER A:114 , ARG A:130 , GOL A:370BINDING SITE FOR RESIDUE TAM A 390
046FC1SOFTWARELYS A:194 , ASP A:207 , ARG A:208 , GOL A:378 , HOH A:467BINDING SITE FOR RESIDUE TAM A 391
047FC2SOFTWARETLA A:393 , HOH A:490 , HOH A:491BINDING SITE FOR RESIDUE FLC A 392
048FC3SOFTWAREGOL A:376 , GOL A:377 , GOL A:378 , FLC A:392BINDING SITE FOR RESIDUE TLA A 393
049FC4SOFTWARESO4 B:343BINDING SITE FOR RESIDUE SO4 B 342
050FC5SOFTWAREASP B:171 , SO4 B:342 , HOH B:419 , HOH B:464BINDING SITE FOR RESIDUE SO4 B 343
051FC6SOFTWAREASN B:303 , LYS B:304BINDING SITE FOR RESIDUE SO4 B 344
052FC7SOFTWAREARG B:60 , ARG B:77 , HOH B:474BINDING SITE FOR RESIDUE SO4 B 345
053FC8SOFTWAREALA B:121 , TYR B:122 , THR B:123 , HOH B:476 , GLU C:67BINDING SITE FOR RESIDUE SO4 B 346
054FC9SOFTWAREASN A:162 , ARG B:65 , ASN B:72 , HOH B:493BINDING SITE FOR RESIDUE SO4 B 347
055GC1SOFTWARETYR B:126 , ILE B:165 , GLN B:168 , ARG B:195 , THR B:196 , ASP B:198 , MSE B:248BINDING SITE FOR RESIDUE SO4 B 348
056GC2SOFTWARELYS B:158 , ASN B:159 , GLN B:160 , HIS B:163 , HOH B:403 , ASN C:31 , ASP C:33BINDING SITE FOR RESIDUE SO4 B 349
057GC3SOFTWAREGLN B:160 , ASN B:197 , HOH B:402BINDING SITE FOR RESIDUE SO4 B 350
058GC4SOFTWAREASP B:147 , GLY B:148 , GLU B:180 , PHE B:181BINDING SITE FOR RESIDUE SO4 B 351
059GC5SOFTWAREALA B:220 , ASN B:221 , SO4 B:359 , HOH B:417BINDING SITE FOR RESIDUE SO4 B 353
060GC6SOFTWAREPHE B:181 , ASP B:182BINDING SITE FOR RESIDUE SO4 B 354
061GC7SOFTWAREHOH B:421 , HOH B:424 , HOH B:425BINDING SITE FOR RESIDUE SO4 B 356
062GC8SOFTWARESO4 B:358 , HOH B:426BINDING SITE FOR RESIDUE SO4 B 357
063GC9SOFTWARESO4 B:357 , HOH B:428 , HOH B:429BINDING SITE FOR RESIDUE SO4 B 358
064HC1SOFTWAREASN B:221 , SO4 B:353 , GOL B:372BINDING SITE FOR RESIDUE SO4 B 359
065HC2SOFTWAREARG B:233 , LYS B:251BINDING SITE FOR RESIDUE SO4 B 360
066HC3SOFTWAREGLN B:262 , HOH B:441BINDING SITE FOR RESIDUE SO4 B 361
067HC4SOFTWAREMSE B:1 , GLU B:2 , ASN B:5 , TLA B:383BINDING SITE FOR RESIDUE GOL B 364
068HC5SOFTWARETYR B:85 , ALA B:86 , GLU B:87 , GLY B:89 , SER B:90 , ARG B:138 , ASN B:139 , SER B:140 , ASP B:141BINDING SITE FOR RESIDUE GOL B 365
069HC6SOFTWAREVAL A:214BINDING SITE FOR RESIDUE GOL B 366
070HC7SOFTWARELEU B:145 , VAL B:146 , ASP B:147 , HOH B:396BINDING SITE FOR RESIDUE GOL B 367
071HC8SOFTWAREASP B:182 , HOH B:414BINDING SITE FOR RESIDUE GOL B 368
072HC9SOFTWAREHOH B:414BINDING SITE FOR RESIDUE GOL B 369
073IC1SOFTWARESO4 C:372BINDING SITE FOR RESIDUE GOL B 370
074IC2SOFTWAREARG B:208BINDING SITE FOR RESIDUE GOL B 371
075IC3SOFTWAREASN B:221 , ASN B:222 , SO4 B:359BINDING SITE FOR RESIDUE GOL B 372
076IC4SOFTWARESER B:287 , ALA B:288 , ASP B:289 , GOL B:374BINDING SITE FOR RESIDUE GOL B 373
077IC5SOFTWARESER B:287 , GOL B:373 , HOH B:445 , HOH B:446BINDING SITE FOR RESIDUE GOL B 374
078IC6SOFTWARELDA A:387 , TYR B:155 , LDA C:382 , LDA C:384BINDING SITE FOR RESIDUE LDA B 375
079IC7SOFTWARELEU B:145 , LDA B:377BINDING SITE FOR RESIDUE LDA B 376
080IC8SOFTWAREVAL B:146 , LDA B:376 , LDA B:379 , HOH B:396BINDING SITE FOR RESIDUE LDA B 377
081IC9SOFTWARETYR B:179BINDING SITE FOR RESIDUE LDA B 378
082JC1SOFTWARELDA B:377BINDING SITE FOR RESIDUE LDA B 379
083JC2SOFTWARETYR B:273 , GLN B:275 , LYS B:277BINDING SITE FOR RESIDUE LDA B 380
084JC3SOFTWAREILE B:294 , PHE B:314BINDING SITE FOR RESIDUE LDA B 381
085JC4SOFTWAREGLY B:206 , ASP B:207 , HOH B:423BINDING SITE FOR RESIDUE TAM B 382
086JC5SOFTWARETYR A:4 , GOL B:364 , HOH B:457 , HOH B:458 , HOH B:459 , HOH B:460BINDING SITE FOR RESIDUE TLA B 383
087JC6SOFTWAREARG C:60 , ARG C:77 , HOH C:399 , HOH C:400 , HOH C:409BINDING SITE FOR RESIDUE SO4 C 342
088JC7SOFTWARELYS C:16 , GLN C:38 , ARG C:60 , ARG C:77 , HOH C:401BINDING SITE FOR RESIDUE SO4 C 343
089JC8SOFTWARETYR C:301 , GLN C:340 , SO4 C:348 , SO4 C:363BINDING SITE FOR RESIDUE SO4 C 344
090JC9SOFTWARESER C:105 , TYR C:106 , LYS C:217 , TYR C:224BINDING SITE FOR RESIDUE SO4 C 345
091KC1SOFTWAREASN C:221 , ASN C:222BINDING SITE FOR RESIDUE SO4 C 346
092KC2SOFTWAREGLN C:262 , HOH C:516BINDING SITE FOR RESIDUE SO4 C 347
093KC3SOFTWAREALA C:110 , PRO C:111 , TRP C:309 , SO4 C:344 , SO4 C:363BINDING SITE FOR RESIDUE SO4 C 348
094KC4SOFTWARETHR C:26 , GLY C:27BINDING SITE FOR RESIDUE SO4 C 349
095KC5SOFTWAREASP C:28 , THR C:329 , ASP C:330BINDING SITE FOR RESIDUE SO4 C 350
096KC6SOFTWAREGLU C:2 , LYS C:304BINDING SITE FOR RESIDUE SO4 C 351
097KC7SOFTWAREHOH B:446 , SO4 C:355 , HOH C:442BINDING SITE FOR RESIDUE SO4 C 352
098KC8SOFTWARETYR C:4 , ASN C:5 , ASP C:7BINDING SITE FOR RESIDUE SO4 C 354
099KC9SOFTWARESO4 C:352 , HOH C:420BINDING SITE FOR RESIDUE SO4 C 355
100LC1SOFTWARELYS C:304BINDING SITE FOR RESIDUE SO4 C 356
101LC2SOFTWARELYS C:84 , SER C:140BINDING SITE FOR RESIDUE SO4 C 357
102LC3SOFTWAREARG C:212 , HOH C:455 , HOH C:457BINDING SITE FOR RESIDUE SO4 C 358
103LC4SOFTWARESER C:164 , ILE C:165BINDING SITE FOR RESIDUE SO4 C 359
104LC5SOFTWAREASN C:205 , ASN C:250 , LYS C:251BINDING SITE FOR RESIDUE SO4 C 360
105LC6SOFTWAREASN C:222 , TYR C:261 , GLN C:262 , PHE C:263 , ASP C:264 , GOL C:380BINDING SITE FOR RESIDUE SO4 C 361
106LC7SOFTWAREALA C:216 , LYS C:217 , TYR C:218 , LEU C:225 , ALA C:226BINDING SITE FOR RESIDUE SO4 C 362
107LC8SOFTWAREMSE C:109 , TYR C:301 , SO4 C:344 , SO4 C:348BINDING SITE FOR RESIDUE SO4 C 363
108LC9SOFTWAREASP C:289 , LEU C:317 , ASP C:318 , ASN C:320BINDING SITE FOR RESIDUE SO4 C 364
109MC1SOFTWARELEU C:281 , ASN C:282 , GLY C:283 , GLY C:286 , SO4 C:366BINDING SITE FOR RESIDUE SO4 C 365
110MC2SOFTWAREGLY C:283 , SO4 C:365 , HOH C:523BINDING SITE FOR RESIDUE SO4 C 366
111MC3SOFTWARETYR B:4 , ASN B:9 , LYS B:10 , ASN C:305 , PHE C:341BINDING SITE FOR RESIDUE SO4 C 367
112MC4SOFTWAREMSE A:1 , ASN A:305 , SO4 A:367 , TYR C:4 , HOH C:538BINDING SITE FOR RESIDUE SO4 C 368
113MC5SOFTWARESO4 A:344 , ASN C:162 , HOH C:465BINDING SITE FOR RESIDUE SO4 C 369
114MC6SOFTWAREASN C:48 , THR C:49 , HOH C:416BINDING SITE FOR RESIDUE SO4 C 370
115MC7SOFTWAREFLC C:391 , TAM C:393 , HOH C:473BINDING SITE FOR RESIDUE SO4 C 371
116MC8SOFTWAREGOL B:370 , GOL C:394 , HOH C:487 , HOH C:491BINDING SITE FOR RESIDUE SO4 C 372
117MC9SOFTWAREHOH C:414 , HOH C:461BINDING SITE FOR RESIDUE GOL C 373
118NC1SOFTWAREHOH C:406BINDING SITE FOR RESIDUE GOL C 374
119NC2SOFTWAREARG C:202 , THR C:245 , TAM C:386BINDING SITE FOR RESIDUE GOL C 375
120NC3SOFTWARETHR C:243 , TAM C:386BINDING SITE FOR RESIDUE GOL C 376
121NC4SOFTWARETAM C:386 , FLC C:388 , HOH C:502BINDING SITE FOR RESIDUE GOL C 377
122NC5SOFTWAREASN C:192 , ARG C:208 , GOL C:1325BINDING SITE FOR RESIDUE GOL C 378
123NC6SOFTWARESO4 A:342 , ASP C:171 , TAM C:387 , GOL C:1325BINDING SITE FOR RESIDUE GOL C 379
124NC7SOFTWAREASP C:264 , SO4 C:361BINDING SITE FOR RESIDUE GOL C 380
125NC8SOFTWAREHOH C:529 , HOH C:532BINDING SITE FOR RESIDUE GOL C 381
126NC9SOFTWARELDA B:375 , TRP C:23 , ASN C:31 , LDA C:383 , LDA C:384 , HOH C:424BINDING SITE FOR RESIDUE LDA C 382
127OC1SOFTWARETRP C:23 , THR C:24 , THR C:25 , SER C:29 , VAL C:310 , LDA C:382 , HOH C:423BINDING SITE FOR RESIDUE LDA C 383
128OC2SOFTWAREILE B:91 , LEU B:135 , GLN B:156 , GLY B:157 , LDA B:375 , HIS C:21 , TRP C:23 , VAL C:335 , ILE C:337 , LDA C:382BINDING SITE FOR RESIDUE LDA C 384
129OC3SOFTWARELYS A:30 , ASN A:31 , ALA A:32 , ASP A:33 , ASP A:64 , LYS C:158 , ASN C:159 , GLN C:160 , ASP C:161BINDING SITE FOR RESIDUE LDA C 385
130OC4SOFTWAREASP C:244 , GOL C:375 , GOL C:376 , GOL C:377 , FLC C:388BINDING SITE FOR RESIDUE TAM C 386
131OC5SOFTWAREGOL C:379 , GOL C:392 , HOH C:466 , HOH C:480 , HOH C:482 , GOL C:1325BINDING SITE FOR RESIDUE TAM C 387
132OC6SOFTWAREASP C:244 , GOL C:377 , TAM C:386 , HOH C:497 , HOH C:502 , HOH C:503 , HOH C:515BINDING SITE FOR RESIDUE FLC C 388
133OC7SOFTWAREGLN C:275 , ASP C:289 , LYS C:292 , HOH C:525BINDING SITE FOR RESIDUE FLC C 389
134OC8SOFTWAREASP C:171 , ASN C:192 , LYS C:194 , ARG C:208 , GOL C:378 , GOL C:379 , TAM C:387BINDING SITE FOR RESIDUE GOL C 1325
135OC9SOFTWAREHOH C:468 , HOH C:469 , HOH C:473BINDING SITE FOR RESIDUE GOL C 390
136PC1SOFTWARESO4 C:371 , TAM C:393 , GOL C:394 , HOH C:487BINDING SITE FOR RESIDUE FLC C 391
137PC2SOFTWARETAM C:387 , HOH C:480BINDING SITE FOR RESIDUE GOL C 392
138PC3SOFTWARESO4 C:371 , FLC C:391 , GOL C:394 , HOH C:484 , HOH C:485 , HOH C:487BINDING SITE FOR RESIDUE TAM C 393
139PC4SOFTWARESO4 C:372 , FLC C:391 , TAM C:393 , HOH C:488 , HOH C:492BINDING SITE FOR RESIDUE GOL C 394

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NSG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3NSG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NSG)

(-) PROSITE Motifs  (1, 3)

Asymmetric/Biological Unit (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GRAM_NEG_PORINPS00576 General diffusion Gram-negative porins signature.OMPF_SALTY316-332
 
 		  3A:294-310
B:294-310
C:294-310

(-) Exons   (0, 0)

(no "Exon" information available for 3NSG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:341
 aligned with OMPF_SALTY | P37432 from UniProtKB/Swiss-Prot  Length:363

    Alignment length:341
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362 
           OMPF_SALTY    23 AEIYNKDGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESWAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF 363
               SCOP domains d3nsga_ A: automated matches                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeeeeeeee.......ee..eeeeeeeeee......eeeeeeeeeee...........eeeeeeeeeeee...eeeeeeeee..hhhhhhh.......................eeeeeeeeee.........eeeeeeee.......hhhhh...eeeeeeeeee..eeeeeeeeee...............eeeeeeeeeeee..eeeeeeeeee.....ee......ee...eeeeeeeeeee.......eeeeeeeeeee........eeeeeeeeeeeee.....eeeeeeeeee................eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRAM_NEG_PORIN   ------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nsg A   1 mEIYNKDGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDmAPYFSGETWGGAYTDNYmTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTmAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNmSIVENTVTDTVEmANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNmNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF 341
                            |       10        20        30        40        50        60        70        80        90       100       110       120      |130       140       150       160       170      |180       190       200       210       220       230    |  240       250       260       270       280       290       300     | 310       320       330       340 
                            |                                                                                                         109-MSE           127-MSE                                           177-MSE                                                   235-MSE      248-MSE                                                   306-MSE                               
                            1-MSE                                                                                                                                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:341
 aligned with OMPF_SALTY | P37432 from UniProtKB/Swiss-Prot  Length:363

    Alignment length:341
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362 
           OMPF_SALTY    23 AEIYNKDGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESWAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF 363
               SCOP domains d3nsgb_ B: automated matches                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeeeeeeee.......eee..eeeeeeeeeee....eeeeeeeeeeee.......hhh.eeeeeeeeeeee...eeeeeeeee..hhhhhh........................ee...eeeee..........eeeeeee...............eeeeeeeeee..eeeeeeeeee...............eeeeeeeeee....eeeeeeee......ee........ee.....eeeeeeee.....eeeeeeeeeeee.........ee...eeeeeeeee....eeeeeeeeee................eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRAM_NEG_PORIN   ------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nsg B   1 mEIYNKDGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDmAPYFSGETWGGAYTDNYmTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTmAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNmSIVENTVTDTVEmANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNmNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF 341
                            |       10        20        30        40        50        60        70        80        90       100       110       120      |130       140       150       160       170      |180       190       200       210       220       230    |  240       250       260       270       280       290       300     | 310       320       330       340 
                            1-MSE                                                                                                     109-MSE           127-MSE                                           177-MSE                                                   235-MSE      248-MSE                                                   306-MSE                               


Chain C from PDB  Type:PROTEIN  Length:341
 aligned with OMPF_SALTY | P37432 from UniProtKB/Swiss-Prot  Length:363

    Alignment length:341
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362 
           OMPF_SALTY    23 AEIYNKDGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESWAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF 363
               SCOP domains d3nsgc_ C: automated matches                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeeeeeeeee......eee..eeeeeeeeeee....eeeeeeeeeeee...hhhhh...eeeeeeeeeeee...eeeeeeee...hhhhhhhhh......................eeeeeeeee.........eeeeeeee...............eeeeeeeeee..eeeeeeeeeee.hhhhh.......eeeeeeeeeeeee..eeeeeeeeee....eee......eee...eeeeeeeeee.....eeeeeeeeeeee.........eeeeeeeeeeeee.....eeeeeeeeee................eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GRAM_NEG_PORIN   ------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nsg C   1 mEIYNKDGNKLDLYGKAVGRHVWTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAFAGLKYAEVGSIDYGRNYGIVYDVESYTDmAPYFSGETWGGAYTDNYmTSRAGGLLTYRNSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTmAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANNVYLAAVYAETRNmSIVENTVTDTVEmANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNmNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITYQF 341
                            |       10        20        30        40        50        60        70        80        90       100       110       120      |130       140       150       160       170      |180       190       200       210       220       230    |  240       250       260       270       280       290       300     | 310       320       330       340 
                            1-MSE                                                                                                     109-MSE           127-MSE                                           177-MSE                                                   235-MSE      248-MSE                                                   306-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Membrane and cell surface proteins and peptides (2046)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NSG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3NSG)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (OMPF_SALTY | P37432)
molecular function
    GO:0015288    porin activity    Catalysis of the transfer of substances, sized less than 1000 Da, from one side of the membrane to the other. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria.
biological process
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0046930    pore complex    Any small opening in a membrane that allows the passage of gases and/or liquids.

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  Cis Peptide Bonds
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  3nsg
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  OMPF_SALTY | P37432
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OMPF_SALTY | P37432: 4kr4 4kr8 4kra

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3NSG)