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(-) Description

Title :  CRYSTAL STRUCTURE OF PF1083 PROTEIN FROM PYROCOCCUS FURIOSUS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET PFR223
 
Authors :  J. Seetharaman, M. Su, P. Patel, R. Xiao, C. Ciccosanti, H. Wang, J. K. Ev R. Nair, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt, Nort Structural Genomics Consortium (Nesg)
Date :  30 Jun 10  (Deposition) - 03 Nov 10  (Release) - 03 Nov 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha-Beta Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Seetharaman, M. Su, P. Patel, R. Xiao, C. Ciccosanti, H. Wang, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt
Northeast Structural Genomics Consortium Target Pfr223
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN PF1083
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET 21-23C
    Expression System StrainBL21(DE3)+ MAGIC
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GenePF1083
    Organism ScientificPYROCOCCUS FURIOSUS
    Organism Taxid186497
    StrainDSM 3638

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric/Biological Unit (2, 10)
No.NameCountTypeFull Name
1AMP1Ligand/IonADENOSINE MONOPHOSPHATE
2MSE9Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:7 , GLY A:9 , LEU A:29 , GLU A:30 , LYS A:31 , GLY A:37 , ARG A:38 , LYS A:210 , VAL A:212 , ASN A:238 , VAL A:239 , HOH A:428 , HOH A:622 , HOH A:664BINDING SITE FOR RESIDUE AMP A 422

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NRN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3NRN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NRN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NRN)

(-) Exons   (0, 0)

(no "Exon" information available for 3NRN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:392
 aligned with Q8U1X1_PYRFU | Q8U1X1 from UniProtKB/TrEMBL  Length:413

    Alignment length:413
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410   
         Q8U1X1_PYRFU     1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLAHLLRILGAKVEIVNSNPKGKILWEGKIFHYRESWKFLSVKEKAKALKLLAEIRMNKLPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAALRWGGPGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIEEKKVYTRDNEEYSFDVAISNVGVRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFNLAVPGEPRIGNTIVFTPGLMINGFNEPSALDKSLAREGYTLIMAHMALKNGNVKKAIEKGWEELLEIFPEGEPLLAQVYRDGNPVNRTRAGLHIEWPLNEVLVVGDGYRPPGGIEVDGIALGVMKALEKLNLGSFSEWYL 413
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----NAD_binding_8-3nrnA01 A:5-72                                        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhh..eeeee...........eeee..eeee.....ee.....hhhhhhhhhhh....eee.....eeee..eeee.hhhhhhh.--------.hhhhhhh........hhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhh...eee....eeeee....eeee....eee..eeee..hhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeee........eee.......eee.hhhhhhhhh...eeeeeeeee....hhhhhhhhhhhhhhhhh...eeeeeeee-------------........eee..........hhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nrn A   1 mRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAmIGGRFTNLPYKGFQLSTGALHmIPHGEDGPLAHLLRILGAKVEIVNSNPKGKILWEGKIFHYRESWKFLS--------KLLAEIRmNKLPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAALRWGGPGLIRGGCKAVIDELERIImENKGKILTRKEVVEINIEEKKVYTRDNEEYSFDVAISNVGVRETVKLIGRDYFDRDYLKQVDSIEPSEGIKFNLAVPGEPRIGNTIVFTPGLmINGFNEPSALDKSLAREGYTLImAHmALKNGNVKKAIEKGWEELLEIFPEGEPLLAQVY-------------HIEWPLNEVLVVGDGYRPPGGIEVDGIALGVmKALEKLNLGSFSEWYL 413
                            |       10        20        30   |    40        50     |  60        70        80        90       100   |     -  |    120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290  |    300       310     | 320       330       340       350 |       -     | 370       380       390      |400       410   
                            |                               34-MSE                56-MSE                                         104      113      |                                                                             200-MSE                                                                                      293-MSE                316-MSE                             352           366                            397-MSE            
                            1-MSE                                                                                                                120-MSE                                                                                                                                                                                                319-MSE                                                                                          

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NRN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NRN)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q8U1X1_PYRFU | Q8U1X1)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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