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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE LEPTOSPIRAL HYPOTHETICAL PROTEIN LIC12922
 
Authors :  P. O. Giuseppe, M. V. Atzingen, A. L. T. O. Nascimento, N. I. T. Zanchin, B. G. Guimaraes
Date :  30 Jun 10  (Deposition) - 24 Nov 10  (Release) - 23 Feb 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (3x)
Keywords :  Nc Domain, Parvulin Domain, Sura Homology, Probable Chaperone, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. O. Giuseppe, M. Von Atzingen, A. L. Nascimento, N. I. Zanchin, B. G. Guimaraes
The Crystal Structure Of The Leptospiral Hypothetical Protein Lic12922 Reveals Homology With The Periplasmic Chaperone Sura.
J. Struct. Biol. V. 173 312 2011
PubMed-ID: 20970503  |  Reference-DOI: 10.1016/J.JSB.2010.10.009

(-) Compounds

Molecule 1 - LIC12922
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPDEST
    Expression System StrainC41(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentRESIDUES 48-362
    GeneLIC12922, LIC_12922
    Organism ScientificLEPTOSPIRA INTERROGANS SEROVAR COPENHAGENI
    Organism Taxid267671
    StrainCOPENHAGENI, FIOCRUZ L1-130 ISOLATE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (1x)A
Biological Unit 2 (3x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:312
 aligned with Q72NB3_LEPIC | Q72NB3 from UniProtKB/TrEMBL  Length:362

    Alignment length:312
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359  
         Q72NB3_LEPIC    50 LNRVIATVGTVSISELDLDDATEKYNRLQKHLKHEDYRKSFRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKRMEVMGITNRKQFEKTMETSSGMPFELWVTELPYQIKKGQLLQLKIAVPPPNEQEIRSWYNQNKDKVGFEIRYRIISIAPENDSIQEENRLYKEVSEIRKSILADPSSFALIAGSPRNDPALRARRGMVEWISSFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCILKIEGKRPTPMENLRGGIQNILYRDKEEDTFHRWLKESRAEIPIQIFDEAYRKENKIPLKEETFHL 361
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains SurA_N_3-3nrkA02 A:50-152                                                                              ------------------------Rotamase_2-3nrkA01 A:177-310                                                                                                          --------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..eeeehhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhh.hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhheeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...hhhhhhh..eeeeeehhhhhhhhhhhhhhhh..........ee.....eeeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee.hhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3nrk A  50 LNRVIATVGTVSISELDLDDATEKYNRLQKHLKHEDYRKSFRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKRMEVMGITNRKQFEKTMETSSGMPFELWVTELPYQIKKGQLLQLKIAVPPPNEQEIRSWYNQNKDKVGFEIRYRIISIAPENDSIQEENRLYKEVSEIRKSILADPSSFALIAGSPRNDPALRARRGMVEWISSFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCILKIEGKRPTPMENLRGGIQNILYRDKEEDTFHRWLKESRAEIPIQIFDEAYRKENKIPLKEETFHL 361
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359  

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (2, 2)

Asymmetric Unit
(-)
Clan: FKBP (43)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q72NB3_LEPIC | Q72NB3)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.

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