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(-) Description

Title :  54-MEMBERED RING MACROCYCLIC BETA-SHEET PEPTIDE
 
Authors :  M. R. Sawaya, D. Eisenberg, J. S. Nowick, T. P. Korman, O. Khakshoor
Date :  15 Jun 10  (Deposition) - 15 Sep 10  (Release) - 22 Sep 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.34
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Biol. Unit 6:  K,L  (1x)
Keywords :  Artificial Beta Sheet Dimer, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Khakshoor, A. J. Lin, T. P. Korman, M. R. Sawaya, S. C. Tsai, D. Eisenberg, J. S. Nowick
X-Ray Crystallographic Structure Of An Artificial Beta-Shee Dimer.
J. Am. Chem. Soc. V. 132 11622 2010
PubMed-ID: 20669960  |  Reference-DOI: 10.1021/JA103438W

(-) Compounds

Molecule 1 - 54-MEMBERED RING MACROCYCLIC BETA-SHEET PEPTIDE
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): AB          
Biological Unit 2 (1x):   CD        
Biological Unit 3 (1x):     EF      
Biological Unit 4 (1x):       GH    
Biological Unit 5 (1x):         IJ  
Biological Unit 6 (1x):           KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 66)

Asymmetric Unit (4, 66)
No.NameCountTypeFull Name
14BF12Mod. Amino Acid4-BROMO-L-PHENYLALANINE
2HAO24Mod. Amino Acid{[3-(HYDRAZINOCARBONYL)-4-METHOXYPHENYL]AMINO}(OXO)ACETIC ACID
3IPA6Ligand/IonISOPROPYL ALCOHOL
4ORN24Mod. Amino AcidORNITHINE
Biological Unit 1 (4, 12)
No.NameCountTypeFull Name
14BF2Mod. Amino Acid4-BROMO-L-PHENYLALANINE
2HAO4Mod. Amino Acid{[3-(HYDRAZINOCARBONYL)-4-METHOXYPHENYL]AMINO}(OXO)ACETIC ACID
3IPA2Ligand/IonISOPROPYL ALCOHOL
4ORN4Mod. Amino AcidORNITHINE
Biological Unit 2 (3, 10)
No.NameCountTypeFull Name
14BF2Mod. Amino Acid4-BROMO-L-PHENYLALANINE
2HAO4Mod. Amino Acid{[3-(HYDRAZINOCARBONYL)-4-METHOXYPHENYL]AMINO}(OXO)ACETIC ACID
3IPA-1Ligand/IonISOPROPYL ALCOHOL
4ORN4Mod. Amino AcidORNITHINE
Biological Unit 3 (4, 11)
No.NameCountTypeFull Name
14BF2Mod. Amino Acid4-BROMO-L-PHENYLALANINE
2HAO4Mod. Amino Acid{[3-(HYDRAZINOCARBONYL)-4-METHOXYPHENYL]AMINO}(OXO)ACETIC ACID
3IPA1Ligand/IonISOPROPYL ALCOHOL
4ORN4Mod. Amino AcidORNITHINE
Biological Unit 4 (4, 12)
No.NameCountTypeFull Name
14BF2Mod. Amino Acid4-BROMO-L-PHENYLALANINE
2HAO4Mod. Amino Acid{[3-(HYDRAZINOCARBONYL)-4-METHOXYPHENYL]AMINO}(OXO)ACETIC ACID
3IPA2Ligand/IonISOPROPYL ALCOHOL
4ORN4Mod. Amino AcidORNITHINE
Biological Unit 5 (3, 10)
No.NameCountTypeFull Name
14BF2Mod. Amino Acid4-BROMO-L-PHENYLALANINE
2HAO4Mod. Amino Acid{[3-(HYDRAZINOCARBONYL)-4-METHOXYPHENYL]AMINO}(OXO)ACETIC ACID
3IPA-1Ligand/IonISOPROPYL ALCOHOL
4ORN4Mod. Amino AcidORNITHINE
Biological Unit 6 (4, 11)
No.NameCountTypeFull Name
14BF2Mod. Amino Acid4-BROMO-L-PHENYLALANINE
2HAO4Mod. Amino Acid{[3-(HYDRAZINOCARBONYL)-4-METHOXYPHENYL]AMINO}(OXO)ACETIC ACID
3IPA1Ligand/IonISOPROPYL ALCOHOL
4ORN4Mod. Amino AcidORNITHINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREORN A:9 , HOH A:69 , HOH A:90 , THR I:5 , TYR I:6 , PHE J:4BINDING SITE FOR RESIDUE IPA A 13
2AC2SOFTWAREHOH A:16 , PHE B:4BINDING SITE FOR RESIDUE IPA B 13
3AC3SOFTWARETYR A:6 , SER A:8 , THR B:2 , THR F:2 , PHE F:4 , HOH F:151BINDING SITE FOR RESIDUE IPA F 13
4AC4SOFTWARETHR E:5 , HOH E:78 , THR F:5 , ORN G:9 , HOH G:220BINDING SITE FOR RESIDUE IPA G 13
5AC5SOFTWARE4BF E:7 , HOH G:65BINDING SITE FOR RESIDUE IPA H 13
6AC6SOFTWARETHR C:5 , TYR C:6 , TYR D:3 , PHE D:4 , ORN K:9 , HAO K:10 , HOH K:21 , HOH K:27BINDING SITE FOR RESIDUE IPA K 13

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NI3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3NI3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NI3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NI3)

(-) Exons   (0, 0)

(no "Exon" information available for 3NI3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:12
                                           
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                  3ni3 A  1 aTYFTYySaxKx 12
                            |     | 10 |
                            |     7-4BF|
                            1-ORN   9-ORN
                                    10-HAO
                                      12-HAO


Chain B from PDB  Type:PROTEIN  Length:12
                                           
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                  3ni3 B  1 aTYFTYySaxKx 12
                            |     | 10 |
                            |     7-4BF|
                            1-ORN   9-ORN
                                    10-HAO
                                      12-HAO


Chain C from PDB  Type:PROTEIN  Length:12
                                           
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                  3ni3 C  1 aTYFTYySaxKx 12
                            |     | 10 |
                            |     7-4BF|
                            1-ORN   9-ORN
                                    10-HAO
                                      12-HAO


Chain D from PDB  Type:PROTEIN  Length:12
                                           
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                  3ni3 D  1 aTYFTYySaxKx 12
                            |     | 10 |
                            |     7-4BF|
                            1-ORN   9-ORN
                                    10-HAO
                                      12-HAO


Chain E from PDB  Type:PROTEIN  Length:12
                                           
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                  3ni3 E  1 aTYFTYySaxKx 12
                            |     | 10 |
                            |     7-4BF|
                            1-ORN   9-ORN
                                    10-HAO
                                      12-HAO


Chain F from PDB  Type:PROTEIN  Length:12
                                           
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                  3ni3 F  1 aTYFTYySaxKx 12
                            |     | 10 |
                            |     7-4BF|
                            1-ORN   9-ORN
                                    10-HAO
                                      12-HAO


Chain G from PDB  Type:PROTEIN  Length:12
                                           
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                  3ni3 G  1 aTYFTYySaxKx 12
                            |     | 10 |
                            |     7-4BF|
                            1-ORN   9-ORN
                                    10-HAO
                                      12-HAO


Chain H from PDB  Type:PROTEIN  Length:12
                                           
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                  3ni3 H  1 aTYFTYySaxKx 12
                            |     | 10 |
                            |     7-4BF|
                            1-ORN   9-ORN
                                    10-HAO
                                      12-HAO


Chain I from PDB  Type:PROTEIN  Length:12
                                           
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                  3ni3 I  1 aTYFTYySaxKx 12
                            |     | 10 |
                            |     7-4BF|
                            1-ORN   9-ORN
                                    10-HAO
                                      12-HAO


Chain J from PDB  Type:PROTEIN  Length:12
                                           
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                  3ni3 J  1 aTYFTYySaxKx 12
                            |     | 10 |
                            |     7-4BF|
                            1-ORN   9-ORN
                                    10-HAO
                                      12-HAO


Chain K from PDB  Type:PROTEIN  Length:12
                                           
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                  3ni3 K  1 aTYFTYySaxKx 12
                            |     | 10 |
                            |     7-4BF|
                            1-ORN   9-ORN
                                    10-HAO
                                      12-HAO


Chain L from PDB  Type:PROTEIN  Length:12
                                           
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ..eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                  3ni3 L  1 aTYFTYySaxKx 12
                            |     | 10 |
                            |     7-4BF|
                            1-ORN   9-ORN
                                    10-HAO
                                      12-HAO
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NI3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NI3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3NI3)

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Asymmetric Unit(hide GO term definitions)
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  3ni3
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