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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF AN ARGININE AGMATINE ANTIPORTER (ADIC) IN COMPLEX WITH A FAB FRAGMENT
 
Authors :  Y. Fang, H. Jayaram, T. Shane, L. Komalkova-Partensky, F. Wu, C. Willia Y. Xiong, C. Miller
Date :  06 Jun 10  (Deposition) - 18 Aug 10  (Release) - 18 Aug 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B,C,D,P,Q,S,W
Biol. Unit 1:  A,B,P,S  (1x)
Biol. Unit 2:  C,D,Q,W  (1x)
Keywords :  Membrane Protein Complex With Fab Fragment, Arginine Agmatine Antiporter, Virtual Proton Pump, Apc Superfamily, Immune System, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Fang, H. Jayaram, T. Shane, L. Komalkova-Partensky, F. Wu, C. Williams, Y. Xiong, C. Miller
Structure Of A Prokaryotic Virtual Proton Pump At 3. 2 A Resolution.
Nature V. 460 1040 2009
PubMed-ID: 19578361  |  Reference-DOI: 10.1038/NATURE08201

(-) Compounds

Molecule 1 - ADIC
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PASK
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ADIC_SALTY
    Organism Scientific: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
    Organism Taxid: 90371
 
Molecule 2 - FAB HEAVY CHAIN
    Cell: HYBRIDOMA
    Chains: Q, P
    Engineered: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 3 - FAB LIGHT CHAIN
    Cell: HYBRIDOMA
    Chains: W, S
    Engineered: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDPQSW
Biological Unit 1 (1x): AB  P S 
Biological Unit 2 (1x):   CD Q W

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3NCY)

(-) Sites  (0, 0)

(no "Site" information available for 3NCY)

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1P:22 -P:96
2P:147 -P:202
3Q:22 -Q:96
4Q:147 -Q:202
5S:23 -S:92
6S:138 -S:199
7W:23 -W:92
8W:138 -W:199

(-) Cis Peptide Bonds  (67, 67)

Asymmetric Unit
No.Residues
1Val A:10 -Gly A:11
2Pro A:70 -Gly A:71
3Gly A:72 -Ser A:73
4Phe A:116 -Pro A:117
5Ala A:166 -Val A:167
6Gly A:169 -Trp A:170
7Gly A:248 -Met A:249
8Asn A:252 -Ala A:253
9Ala A:274 -Gly A:275
10Ala A:346 -Ala A:347
11Gly A:381 -Lys A:382
12Pro A:435 -Tyr A:436
13Val B:10 -Gly B:11
14Pro B:70 -Gly B:71
15Gly B:72 -Ser B:73
16Phe B:116 -Pro B:117
17Ala B:166 -Val B:167
18Gly B:169 -Trp B:170
19Gly B:248 -Met B:249
20Asn B:252 -Ala B:253
21Ala B:346 -Ala B:347
22Gly B:381 -Lys B:382
23Pro B:435 -Tyr B:436
24Pro C:70 -Gly C:71
25Gly C:72 -Ser C:73
26Phe C:116 -Pro C:117
27Ile C:141 -Val C:142
28Gly C:169 -Trp C:170
29Met C:247 -Gly C:248
30Gly C:248 -Met C:249
31Asn C:252 -Ala C:253
32Ala C:269 -Leu C:270
33Ala C:274 -Gly C:275
34Asn C:345 -Ala C:346
35Ala C:346 -Ala C:347
36Ala C:347 -Lys C:348
37Gly C:381 -Lys C:382
38Pro C:435 -Tyr C:436
39Val D:10 -Gly D:11
40Pro D:70 -Gly D:71
41Gly D:72 -Ser D:73
42Phe D:116 -Pro D:117
43Ile D:141 -Val D:142
44Gly D:169 -Trp D:170
45Met D:247 -Gly D:248
46Gly D:248 -Met D:249
47Asn D:252 -Ala D:253
48Ala D:274 -Gly D:275
49Ala D:346 -Ala D:347
50Pro D:435 -Tyr D:436
51Pro Q:9 -Glu Q:10
52Gly Q:101 -Asn Q:102
53Asn Q:102 -Tyr Q:103
54Gly Q:104 -Gly Q:105
55Pro P:9 -Glu P:10
56Ser P:91 -Ser P:92
57Gly P:101 -Asn P:102
58Asn P:102 -Tyr P:103
59Gly P:104 -Gly P:105
60Pro P:133 -Val P:134
61Ser W:7 -Pro W:8
62Asn W:98 -Pro W:99
63Tyr W:144 -Pro W:145
64Val W:150 -Lys W:151
65Ser S:7 -Pro S:8
66Asn S:98 -Pro S:99
67Tyr S:144 -Pro S:145

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NCY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NCY)

(-) Exons   (0, 0)

(no "Exon" information available for 3NCY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:422
 aligned with ADIC_SALTY | P60066 from UniProtKB/Swiss-Prot  Length:445

    Alignment length:432
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439  
           ADIC_SALTY    10 VGLIPVTLMVSGNIMGSGVFLLPANLAATGGIAIYGWLVTIIGALALSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTLTCVAVLWIFVLLNIVGPKMITRVQAVATVLALVPIVGIAVFGWFWFKGETYMAAWNVSGMNTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLLIVGVLMTIFQFSSMSPNAAKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPLYLLITFVAFVYCIWAVIGSGAKEVMWSFVTLMVITALYALNYNRIHKNPYPLDAP 441
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhh......hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...........-----......hhhhhhhhhhhhhhhhhh..hhhhhhh.......hhhhhhhhhhhhhhhhhhhh...........hhhhhh....hhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh.-----....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ncy A  10 VGLIPVTLMVSGNIMGSGVFLLPANLAATGGIAIYGWLVTIIGALALSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTLTCVAVLWIFVLLNIVGPKMITRVQAVATVLALVPIVGIAVFGWFWFKGE-----WNVSGMNTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFAR-----TPVAGLLIVGVLMTIFQFSSMSPNAAKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPLYLLITFVAFVYCIWAVIGSGAKEVMWSFVTLMVITALYALNYNRIHKNPYPLDAP 441
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169      |  -  |    189       199       209       219       229       239       249       259       269       279       289       299       309      |  -  |    329       339       349       359       369       379       389       399       409       419       429       439  
                                                                                                                                                                                                176   182                                                                                                                                   316   322                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:420
 aligned with ADIC_SALTY | P60066 from UniProtKB/Swiss-Prot  Length:445

    Alignment length:431
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439 
           ADIC_SALTY    10 VGLIPVTLMVSGNIMGSGVFLLPANLAATGGIAIYGWLVTIIGALALSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTLTCVAVLWIFVLLNIVGPKMITRVQAVATVLALVPIVGIAVFGWFWFKGETYMAAWNVSGMNTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLLIVGVLMTIFQFSSMSPNAAKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPLYLLITFVAFVYCIWAVIGSGAKEVMWSFVTLMVITALYALNYNRIHKNPYPLDA 440
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh......hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.........-------......hhhhhhhhhhhhhhhhhh..hhhhhhh.......hhhhhhhhhhhhhhhhhhhh...........hhhhhh....hhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh......----hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ncy B  10 VGLIPVTLMVSGNIMGSGVFLLPANLAATGGIAIYGWLVTIIGALALSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTLTCVAVLWIFVLLNIVGPKMITRVQAVATVLALVPIVGIAVFGWFWFK-------WNVSGMNTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAG----GLLIVGVLMTIFQFSSMSPNAAKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPLYLLITFVAFVYCIWAVIGSGAKEVMWSFVTLMVITALYALNYNRIHKNPYPLDA 440
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169    |    -  |    189       199       209       219       229       239       249       259       269       279       289       299       309       319 |    |329       339       349       359       369       379       389       399       409       419       429       439 
                                                                                                                                                                                              174     182                                                                                                                                        321  326                                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:420
 aligned with ADIC_SALTY | P60066 from UniProtKB/Swiss-Prot  Length:445

    Alignment length:431
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440 
           ADIC_SALTY    11 GLIPVTLMVSGNIMGSGVFLLPANLAATGGIAIYGWLVTIIGALALSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTLTCVAVLWIFVLLNIVGPKMITRVQAVATVLALVPIVGIAVFGWFWFKGETYMAAWNVSGMNTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLLIVGVLMTIFQFSSMSPNAAKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPLYLLITFVAFVYCIWAVIGSGAKEVMWSFVTLMVITALYALNYNRIHKNPYPLDAP 441
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh....hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.........-------......hhhhhhhhhhhhhhhhh...hhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.................hhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh.----.....hhhhhhhhhhhhhhh.......hhhhhhhhhh...hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ncy C  11 GLIPVTLMVSGNIMGSGVFLLPANLAATGGIAIYGWLVTIIGALALSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTLTCVAVLWIFVLLNIVGPKMITRVQAVATVLALVPIVGIAVFGWFWFK-------WNVSGMNTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFAR----GTPVAGLLIVGVLMTIFQFSSMSPNAAKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPLYLLITFVAFVYCIWAVIGSGAKEVMWSFVTLMVITALYALNYNRIHKNPYPLDAP 441
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170   |     - |     190       200       210       220       230       240       250       260       270       280       290       300       310     |   -|      330       340       350       360       370       380       390       400       410       420       430       440 
                                                                                                                                                                                             174     182                                                                                                                                   316  321                                                                                                                        


Chain D from PDB  Type:PROTEIN  Length:419
 aligned with ADIC_SALTY | P60066 from UniProtKB/Swiss-Prot  Length:445

    Alignment length:430
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439
           ADIC_SALTY    10 VGLIPVTLMVSGNIMGSGVFLLPANLAATGGIAIYGWLVTIIGALALSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTLTCVAVLWIFVLLNIVGPKMITRVQAVATVLALVPIVGIAVFGWFWFKGETYMAAWNVSGMNTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLLIVGVLMTIFQFSSMSPNAAKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPLYLLITFVAFVYCIWAVIGSGAKEVMWSFVTLMVITALYALNYNRIHKNPYPLD 439
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) AA_permease_2-3ncyD01 D:10-427                                                                                                                                                                                                                                                                                                                                                                                                    ------------ Pfam domains (1)
           Pfam domains (2) AA_permease_2-3ncyD02 D:10-427                                                                                                                                                                                                                                                                                                                                                                                                    ------------ Pfam domains (2)
           Pfam domains (3) AA_permease_2-3ncyD03 D:10-427                                                                                                                                                                                                                                                                                                                                                                                                    ------------ Pfam domains (3)
           Pfam domains (4) AA_permease_2-3ncyD04 D:10-427                                                                                                                                                                                                                                                                                                                                                                                                    ------------ Pfam domains (4)
         Sec.struct. author ..hhhhhhhhhhhhh....hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.........-------......hhhhhhhhhhhhhhhhh...hhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.................hhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh.----.....hhhhhhhhhhhhhhh........hhhhhh......hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ncy D  10 VGLIPVTLMVSGNIMGSGVFLLPANLAATGGIAIYGWLVTIIGALALSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTLTCVAVLWIFVLLNIVGPKMITRVQAVATVLALVPIVGIAVFGWFWFK-------WNVSGMNTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFAR----GTPVAGLLIVGVLMTIFQFSSMSPNAAKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPLYLLITFVAFVYCIWAVIGSGAKEVMWSFVTLMVITALYALNYNRIHKNPYPLD 439
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169    |    -  |    189       199       209       219       229       239       249       259       269       279       289       299       309      |  - |     329       339       349       359       369       379       389       399       409       419       429       439
                                                                                                                                                                                              174     182                                                                                                                                   316  321                                                                                                                      


Chain P from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee...........eeeeee..........eeeeee.....eeeeeee...............eee.......eeeeee...........eeeeee.......eeee.................eee...........eeeeeeeee..........hhhhh....eee...ee....eee.eeeeee.........eeee.hhhhh..eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ncy P   1 QVQLQQSGPELVKPGALVKISCKASGYTFTNYDINWVKQRPGQGLEWIGWIYPGDGSTMYNEKFKGKATLTADKSSSTAYMQLSSLTSENSSVYFCARLDGNYGGWFAYWGQGTSVTVSSAKTTPPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP 219
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210         


Chain Q from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee....ee.....eeeeee..........eeeeee.....eeeeeee.....eee.......eee.......eeeeee...........eeeeee.......eeee......ee.........eee...........eeeeeeeee..........hhhhh....eee...ee....eee.eeeeee.........eeee.hhhhh..eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ncy Q   1 QVQLQQSGPELVKPGALVKISCKASGYTFTNYDINWVKQRPGQGLEWIGWIYPGDGSTMYNEKFKGKATLTADKSSSTAYMQLSSLTSENSSVYFCARLDGNYGGWFAYWGQGTSVTVSSAKTTPPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIV 218
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210        


Chain S from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee.....eeeee.........eeeee.......eeee...ee.......eeeeee..eeeeee........eeeeeee......ee...eeeee.......eeeee..hhhhhh...eeeeeeeeee....................eeeee.........eeeeeeeeehhhhhhhh..eee............eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ncy S   1 ELVMTQSPAIMSASPGEKVTMTCSASSSVNYMHWYQQKSGTSPKRWIYDTSKLASGVPARFSGSGSGTSYSLTISSMEAEDAATYYCQQWSYNPPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR 216
                                    10        20        30|       45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215 
                                                        30|                                                                                                                                                                                    
                                                         36                                                                                                                                                                                    


Chain W from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee.....eeeee.........eeeee.......eeee...ee.......eeeeee..eeeeee........eeeeeee......ee...eeeee.......eeeee..hhhhhh...eeeeeeeeee....................eeeee.........eeeeeeeeehhhhhhhh..eee............eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ncy W   1 ELVMTQSPAIMSASPGEKVTMTCSASSSVNYMHWYQQKSGTSPKRWIYDTSKLASGVPARFSGSGSGTSYSLTISSMEAEDAATYYCQQWSYNPPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR 216
                                    10        20        30|       45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215 
                                                        30|                                                                                                                                                                                    
                                                         36
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NCY)

(-) CATH Domains  (0, 0 ; only for superseded entry 3HQK: 1,6)

(no "CATH Domain" information available for 3NCY, only for superseded entry 3HQK replaced by 3NCY)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: APC (6)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (ADIC_SALTY | P60066)
molecular function
    GO:0015179    L-amino acid transmembrane transporter activity    Enables the transfer of an L-amino acid from one side of a membrane to the other. L-amino acids are the L-enantiomers of amino acids.
    GO:0015171    amino acid transmembrane transporter activity    Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group.
    GO:0015297    antiporter activity    Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out).
biological process
    GO:1902475    L-alpha-amino acid transmembrane transport    The directed movement of L-alpha-amino acid across a membrane.
    GO:0015807    L-amino acid transport    The directed movement of L-enantiomer amino acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0003333    amino acid transmembrane transport    The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore.
    GO:0006865    amino acid transport    The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  Cis Peptide Bonds
    Ala A:166 - Val A:167   [ RasMol ]  
    Ala A:274 - Gly A:275   [ RasMol ]  
    Ala A:346 - Ala A:347   [ RasMol ]  
    Ala B:166 - Val B:167   [ RasMol ]  
    Ala B:346 - Ala B:347   [ RasMol ]  
    Ala C:269 - Leu C:270   [ RasMol ]  
    Ala C:274 - Gly C:275   [ RasMol ]  
    Ala C:346 - Ala C:347   [ RasMol ]  
    Ala C:347 - Lys C:348   [ RasMol ]  
    Ala D:274 - Gly D:275   [ RasMol ]  
    Ala D:346 - Ala D:347   [ RasMol ]  
    Asn A:252 - Ala A:253   [ RasMol ]  
    Asn B:252 - Ala B:253   [ RasMol ]  
    Asn C:252 - Ala C:253   [ RasMol ]  
    Asn C:345 - Ala C:346   [ RasMol ]  
    Asn D:252 - Ala D:253   [ RasMol ]  
    Asn P:102 - Tyr P:103   [ RasMol ]  
    Asn Q:102 - Tyr Q:103   [ RasMol ]  
    Asn S:98 - Pro S:99   [ RasMol ]  
    Asn W:98 - Pro W:99   [ RasMol ]  
    Gly A:169 - Trp A:170   [ RasMol ]  
    Gly A:248 - Met A:249   [ RasMol ]  
    Gly A:381 - Lys A:382   [ RasMol ]  
    Gly A:72 - Ser A:73   [ RasMol ]  
    Gly B:169 - Trp B:170   [ RasMol ]  
    Gly B:248 - Met B:249   [ RasMol ]  
    Gly B:381 - Lys B:382   [ RasMol ]  
    Gly B:72 - Ser B:73   [ RasMol ]  
    Gly C:169 - Trp C:170   [ RasMol ]  
    Gly C:248 - Met C:249   [ RasMol ]  
    Gly C:381 - Lys C:382   [ RasMol ]  
    Gly C:72 - Ser C:73   [ RasMol ]  
    Gly D:169 - Trp D:170   [ RasMol ]  
    Gly D:248 - Met D:249   [ RasMol ]  
    Gly D:72 - Ser D:73   [ RasMol ]  
    Gly P:101 - Asn P:102   [ RasMol ]  
    Gly P:104 - Gly P:105   [ RasMol ]  
    Gly Q:101 - Asn Q:102   [ RasMol ]  
    Gly Q:104 - Gly Q:105   [ RasMol ]  
    Ile C:141 - Val C:142   [ RasMol ]  
    Ile D:141 - Val D:142   [ RasMol ]  
    Met C:247 - Gly C:248   [ RasMol ]  
    Met D:247 - Gly D:248   [ RasMol ]  
    Phe A:116 - Pro A:117   [ RasMol ]  
    Phe B:116 - Pro B:117   [ RasMol ]  
    Phe C:116 - Pro C:117   [ RasMol ]  
    Phe D:116 - Pro D:117   [ RasMol ]  
    Pro A:435 - Tyr A:436   [ RasMol ]  
    Pro A:70 - Gly A:71   [ RasMol ]  
    Pro B:435 - Tyr B:436   [ RasMol ]  
    Pro B:70 - Gly B:71   [ RasMol ]  
    Pro C:435 - Tyr C:436   [ RasMol ]  
    Pro C:70 - Gly C:71   [ RasMol ]  
    Pro D:435 - Tyr D:436   [ RasMol ]  
    Pro D:70 - Gly D:71   [ RasMol ]  
    Pro P:133 - Val P:134   [ RasMol ]  
    Pro P:9 - Glu P:10   [ RasMol ]  
    Pro Q:9 - Glu Q:10   [ RasMol ]  
    Ser P:91 - Ser P:92   [ RasMol ]  
    Ser S:7 - Pro S:8   [ RasMol ]  
    Ser W:7 - Pro W:8   [ RasMol ]  
    Tyr S:144 - Pro S:145   [ RasMol ]  
    Tyr W:144 - Pro W:145   [ RasMol ]  
    Val A:10 - Gly A:11   [ RasMol ]  
    Val B:10 - Gly B:11   [ RasMol ]  
    Val D:10 - Gly D:11   [ RasMol ]  
    Val W:150 - Lys W:151   [ RasMol ]  
 
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 Related Entries

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