Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Biol.Unit 1 - manually
(-)Asymmetric Unit
(-)Biological Unit 1
collapse expand < >
Image Biol.Unit 1 - manually
Biol.Unit 1 - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF SEX PHEROMONE STAPH-CAM373 PRECURSOR
 
Authors :  C. Chang, G. Chhor, S. Clancy, A. Joachimiak, Midwest Center For Str Genomics (Mcsg)
Date :  18 May 10  (Deposition) - 02 Jun 10  (Release) - 02 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Mcsg, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Chang, G. Chhor, S. Clancy, A. Joachimiak
Crystal Structure Of Sex Pheromone Staph-Cam373 Precursor
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SEX PHEROMONE STAPH-CAM373
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)MAGIC
    Expression System Taxid469008
    Expression System VectorPMCSG19
    FragmentSEQUENCE DATABASE RESIDUES 57-340
    GeneBC_4675
    Organism ScientificBACILLUS CEREUS
    Organism Taxid226900
    StrainATCC 14579 / DSM 31

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric Unit (1, 7)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 14)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3N2Q)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3N2Q)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Tyr A:229 -Pro A:230

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3N2Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3N2Q)

(-) Exons   (0, 0)

(no "Exon" information available for 3N2Q)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:282
 aligned with Q816Y4_BACCR | Q816Y4 from UniProtKB/TrEMBL  Length:340

    Alignment length:286
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334      
         Q816Y4_BACCR    55 VIPLKEQKVINTANIKTNSKLDLAEYENGLINIATQQFDTESHVLQLNQYIPEKLIDELVAKVEAPVLTNIIEQDYFGKQNSNELSLSGVMIGLAMSSSVSNEEAMSKGTEVAKQLIEAINKNDKYNKSPITFAIFKQESTSSLKNGTYIASATVQKNDTNLGNWSTIDEKSYSYPSDEFTQAHGEDNTKINNFAKEIKGFSNGDFIPVNAKVSYKKDQMDTLNMNIVIKYNGKTELMALTQLAAQGMLDKLPKDAKVQLQIKSESKIEAVIIKEKNSDKPFVSFL 340
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --CamS-3n2qA01 A:57-337                                                                                                                                                                                                                                                                    --- Pfam domains
         Sec.struct. author ..........hhhhhhhh...hhhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhh.....eeeeeeeeeee.---...eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh.......eeeeeee..........eeeeeeee...............eeeee.hhhhhhhhhhhhhhhhhhhhhhh..-.......eeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhh....eeeeeee....eeeeeee.......eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n2q A  55 NAPLKEQKVINTANIKTNSKLDLAEYENGLINIATQQFDTESHVLQLNQYIPEKLIDELVAKVEAPVLTNIIEQDYFGK---NELSLSGVmIGLAmSSSVSNEEAmSKGTEVAKQLIEAINKNDKYNKSPITFAIFKQESTSSLKNGTYIASATVQKNDTNLGNWSTIDEKSYSYPSDEFTQAHGEDNTKINNFAKEIKGF-NGDFIPVNAKVSYKKDQmDTLNmNIVIKYNGKTELmALTQLAAQGmLDKLPKDAKVQLQIKSESKIEAVIIKEKNSDKPFVSFL 340
                                    64        74        84        94       104       114       124        |-  |    144|    | 154     | 164       174       184       194       204       214       224       234       244       254| |    264       274    |  284       294       304       314       324       334      
                                                                                                        133 137     145-MSE|       160-MSE                                                                                        255 |              274-MSE|          292-MSE   302-MSE                                  
                                                                                                                         150-MSE                                                                                                    257                   279-MSE                                                         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3N2Q)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3N2Q)

(-) Pfam Domains  (1, 1)

Asymmetric Unit

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3N2Q)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
(no "Sites" information available for 3n2q)
 
  Cis Peptide Bonds
    Tyr A:229 - Pro A:230   [ RasMol ]  
 
Biological Unit
  Complete Structure
    Biological Unit 1  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3n2q
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q816Y4_BACCR | Q816Y4
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  Q816Y4_BACCR | Q816Y4
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3N2Q)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3N2Q)