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(-) Description

Title :  CRYSTAL STRUCTURE OF PROBABLE O-SUCCINYLBENZOIC ACID SYNTHETASE FROM KOSMOTOGA OLEARIA
 
Authors :  Y. Patskovsky, R. Toro, M. Dickey, J. M. Sauder, J. Gerlt, S. C. Almo, S. K New York Sgx Research Center For Structural Genomics (Nysgx
Date :  05 May 10  (Deposition) - 19 May 10  (Release) - 19 May 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Enolase, Structural Genomics, Protein Structure Initiative, Psi, Nysgrc, New York Structural Genomics Research Consortium, New York Structural Genomix Research Consortium, Nysgxrc, Ligase, New York Sgx Research Center For Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, M. Dickey, J. M. Sauder, J. Gerlt, S. K. Burley, S. C. Almo
Crystal Structure Of O-Succinylbenzoic Acid Synthetase From Kosmotoga Olearia
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MANDELATE RACEMASE/MUCONATE LACTONIZING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: KOLE_0682
    Organism Scientific: KOSMOTOGA OLEARIA
    Organism Taxid: 521045
    Strain: TBF 19.5.1
    Synonym: PROBABLE O-SUCCINYLBENZOIC ACID SYNTHETASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2PO42Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:210 , GLU A:235 , ASP A:260 , LYS A:284 , HOH A:462 , HOH A:558BINDING SITE FOR RESIDUE MG A 400
2AC2SOFTWARELYS A:96 , ARG A:100 , GLY A:101 , HIS A:103 , ARG A:106 , TYR A:240BINDING SITE FOR RESIDUE PO4 A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MWC)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Met A:313 -Pro A:314

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MWC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MWC)

(-) Exons   (0, 0)

(no "Exon" information available for 3MWC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:388
 aligned with C5CFI0_KOSOT | C5CFI0 from UniProtKB/TrEMBL  Length:391

    Alignment length:388
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381        
         C5CFI0_KOSOT     2 ITESARIDGVSLYEIVIPMKIPFQISSGTCYTRRSLVVEIREGDLFGYGESAPFEEPFYLGETLETTKVILKNHLLPMILGKEPLSIEEFNHLIKNGIRGNHFARCGVENAYWDLIAKKNKISLKAMIEKKMKNLGVKQEYLASNNYIESGAALGIPEDGRIETLIHQVEESLQEGYRRIKIKIKPGWDVEPLQETRRAVGDHFPLWTDANSSFELDQWETFKAMDAAKCLFHEQPLHYEALLDLKELGERIETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVGGLLEAIKIYKIATDNGIKLWGGTMPESGLGARFLISLASFRGFVFPADVAASEKWYGKGNDLVENTMTDGKIYVPDEPGASFDMTLSHLEALGKKIWESQ 389
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------MR_MLE_N-3mwcA01 A:9-129                                                                                                 ---------------------------------------------------------------MR_MLE-3mwcA02 A:193-260                                            --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeeeee.............eeeeeeeeeee..eeeeeee...........hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhh...eee..eee......hhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhh............hhhhhhh.........ee..eee...........hhhhhhhheeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mwc A   2 LTESARIDGVSLYEIVIPMKIPFQISSGTCYTRRSLVVEIREGDLFGYGESAPFEEPFYLGETLETTKVILKNHLLPMILGKEPLSIEEFNHLIKNGIRGNHFARCGVENAYWDLIAKKNKISLKAMIEKKMKNLGVKQEYLASNNYIESGAALGIPEDGRIETLIHQVEESLQEGYRRIKIKIKPGWDVEPLQETRRAVGDHFPLWTDANSSFELDQWETFKAMDAAKCLFHEQPLHYEALLDLKELGERIETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVGGLLEAIKIYKIATDNGIKLWGGTMPESGLGARFLISLASFRGFVFPADVAASEKWYGKGNDLVENTMTDGKIYVPDEPGASFDMTLSHLEALGKKIWESQ 389
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MWC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MWC)

(-) Pfam Domains  (2, 2)

Asymmetric Unit
(-)
Clan: Enolase_N (69)
(-)
Clan: Enolase_TIM (82)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A   (C5CFI0_KOSOT | C5CFI0)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016836    hydro-lyase activity    Catalysis of the cleavage of a carbon-oxygen bond by elimination of water.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0009234    menaquinone biosynthetic process    The chemical reactions and pathways resulting in the formation of any of the menaquinones. Structurally, menaquinones consist of a methylated naphthoquinone ring structure and side chains composed of a variable number of unsaturated isoprenoid residues. Menaquinones that have vitamin K activity and are known as vitamin K2.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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