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(-) Description

Title :  DOMAIN SWAPPED SGRAI WITH DNA AND CALCIUM BOUND
 
Authors :  P. W. Dunten, N. C. Horton, E. J. Little
Date :  27 Apr 10  (Deposition) - 10 Nov 10  (Release) - 05 Jan 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,K,L,M,N,O,P,Q,R
Biol. Unit 1:  A,B,K,L  (1x)
Biol. Unit 2:  C,D,M,N  (1x)
Biol. Unit 3:  E,F,O,P  (1x)
Biol. Unit 4:  G,H,Q,R  (1x)
Keywords :  Restriction Enzyme-Dna Complex, Hydrolase-Dna Complex, Domain Swapping (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. K. Park, H. K. Joshi, A. Agrawal, M. I. Ghare, E. J. Little, P. W. Dunten, J. Bitinaite, N. C. Horton
Domain Swapping In Allosteric Modulation Of Dna Specificity
Plos Biol. V. 8 E1000 2010
PubMed-ID: 21151881  |  Reference-DOI: 10.1371/JOURNAL.PBIO.1000554

(-) Compounds

Molecule 1 - SGRAIR RESTRICTION ENZYME
    Chains: A, B, C, D, E, F, G, H
    EC Number: 3.1.21.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21A_SGRAIR
    Expression System Strain: ER2566
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SGRAIR
    Organism Scientific: STREPTOMYCES GRISEUS
    Organism Taxid: 1911
 
Molecule 2 - DNA (5'- D(*AP*AP*GP*TP*CP*CP*AP*CP*CP*GP*GP*TP*GP*GP*AP*CP*T)-3')
    Chains: L, K, N, M, P, O, R, Q
    Engineered: YES
    Other Details: INCLUDES THE SGRAI RECOGNITION SEQUENCE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHKLMNOPQR
Biological Unit 1 (1x): AB      KL      
Biological Unit 2 (1x):   CD      MN    
Biological Unit 3 (1x):     EF      OP  
Biological Unit 4 (1x):       GH      QR

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 22)

Asymmetric Unit (1, 22)
No.NameCountTypeFull Name
1CA22Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:188 , PHE A:241 , HOH A:1178 , HOH A:1179 , DC K:8 , HOH K:1180BINDING SITE FOR RESIDUE CA A 1
02AC2SOFTWAREGLU A:103 , ASN A:149 , LEU A:150 , HOH A:353 , HOH A:964 , HOH A:982 , HOH A:1215BINDING SITE FOR RESIDUE CA A 340
03AC3SOFTWARESER A:153 , HOH A:1288 , HOH A:1289BINDING SITE FOR RESIDUE CA A 341
04AC4SOFTWAREASP B:188 , PHE B:241 , HOH B:1174 , HOH B:1176 , DC L:8 , HOH L:1175BINDING SITE FOR RESIDUE CA B 340
05AC5SOFTWAREGLU B:103 , ASN B:149 , LEU B:150 , HOH B:950 , HOH B:1224 , HOH B:1225 , HOH B:1226BINDING SITE FOR RESIDUE CA B 341
06AC6SOFTWARESER B:153 , HOH B:1290 , HOH B:1292 , HOH L:1293BINDING SITE FOR RESIDUE CA B 342
07AC7SOFTWAREASP C:188 , PHE C:241 , HOH C:1170 , HOH C:1172 , DC N:8 , HOH N:1171BINDING SITE FOR RESIDUE CA C 340
08AC8SOFTWAREGLU C:103 , ASN C:149 , LEU C:150 , HOH C:352 , HOH C:746 , HOH C:914 , HOH C:1220BINDING SITE FOR RESIDUE CA C 341
09AC9SOFTWARESER C:153 , HOH N:791 , HOH N:825BINDING SITE FOR RESIDUE CA C 342
10BC1SOFTWAREASP D:188 , PHE D:241 , HOH D:1188 , HOH D:1190 , DC M:8 , HOH M:1189BINDING SITE FOR RESIDUE CA D 340
11BC2SOFTWAREGLU D:103 , ASN D:149 , LEU D:150 , HOH D:376 , HOH D:1263 , HOH D:1264 , HOH D:1265BINDING SITE FOR RESIDUE CA D 341
12BC3SOFTWARESER D:153 , HOH D:752 , HOH D:1085 , HOH D:1269 , HOH M:1271BINDING SITE FOR RESIDUE CA D 342
13BC4SOFTWAREASP E:188 , PHE E:241 , HOH E:1163 , HOH E:1165 , DC O:8 , HOH O:1164BINDING SITE FOR RESIDUE CA E 340
14BC5SOFTWAREGLU E:103 , ASN E:149 , LEU E:150 , HOH E:1227 , HOH E:1228BINDING SITE FOR RESIDUE CA E 341
15BC6SOFTWAREASP F:188 , PHE F:241 , HOH F:1079 , HOH F:1182 , DC P:8 , HOH P:1181BINDING SITE FOR RESIDUE CA F 340
16BC7SOFTWAREGLU F:103 , ASN F:149 , LEU F:150 , HOH F:347 , HOH F:1266 , HOH F:1267 , HOH F:1268BINDING SITE FOR RESIDUE CA F 341
17BC8SOFTWARESER F:153 , HOH F:945BINDING SITE FOR RESIDUE CA F 342
18BC9SOFTWAREASP G:188 , PHE G:241 , HOH G:1193 , HOH G:1194 , DC Q:8 , HOH Q:1192BINDING SITE FOR RESIDUE CA G 340
19CC1SOFTWAREGLU G:103 , ASN G:149 , LEU G:150 , HOH G:966 , HOH G:1209 , HOH G:1210 , HOH G:1211BINDING SITE FOR RESIDUE CA G 341
20CC2SOFTWAREASP H:188 , PHE H:241 , HOH H:1160 , HOH H:1161 , DC R:8 , HOH R:1159BINDING SITE FOR RESIDUE CA H 340
21CC3SOFTWAREGLU H:103 , ASN H:149 , LEU H:150 , HOH H:1119 , HOH H:1136 , HOH H:1167 , HOH H:1168BINDING SITE FOR RESIDUE CA H 341
22CC4SOFTWARESER H:153 , HOH H:1273 , HOH R:1075 , HOH R:1275BINDING SITE FOR RESIDUE CA H 342

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MQ6)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gln A:129 -Pro A:130
2Gln B:129 -Pro B:130
3Gln C:129 -Pro C:130
4Gln D:129 -Pro D:130
5Gln E:129 -Pro E:130
6Gln F:129 -Pro F:130
7Gln G:129 -Pro G:130
8Gln H:129 -Pro H:130

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MQ6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MQ6)

(-) Exons   (0, 0)

(no "Exon" information available for 3MQ6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:332
 aligned with Q9F6L0_STRGR | Q9F6L0 from UniProtKB/TrEMBL  Length:339

    Alignment length:338
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
         Q9F6L0_STRGR     2 PFTYSIEATRNLATTERCIQDIRNAPVRNRSTQFQLAQQNMLAYTFGEVIPGFASAGINGMNYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLAEGRSAVHRAIRELYVPPTAADLARRFFAFLNERMELVNG 339
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh.hhhhh.eee..------....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhh.eeeee.....hhhhhhhhhhhhhhhhhhhhhhh...........eeeee.hhhhh.hhhhhh.....hhhhhhhhhhhhhhhh...hhh.eeeeeee....hhhhhhhhhhhhhhhhhhhh.........eeee......hhhhhhh...hhhhhhh...........ee...hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mq6 A   2 PFTYSIEATRNLATTERCIQDIR------RSTQFQLAQQNMLAYTFGEVIPGFASAGINGMDYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLAEGRSAVHRAIRELYVPPTAADLARRFFAFLNERMELVNG 339
                                    11        21  |     31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
                                                 24     31                                                                                                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:338
 aligned with Q9F6L0_STRGR | Q9F6L0 from UniProtKB/TrEMBL  Length:339

    Alignment length:338
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
         Q9F6L0_STRGR     2 PFTYSIEATRNLATTERCIQDIRNAPVRNRSTQFQLAQQNMLAYTFGEVIPGFASAGINGMNYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLAEGRSAVHRAIRELYVPPTAADLARRFFAFLNERMELVNG 339
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh.eee............eeehhhhhhhhhhh.......hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhh.eeeee.....hhhhhhhhhhhhhhhhhhhhhhh...........eeeee.hhhhh.hhhhh......hhhhhhhhhhhhhhhh...hhh.eeeeeee....hhhhhhhhhhhhhhhhhhhhhh.......eeee......hhhhhhh...hhhhhhhh..........ee...hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mq6 B   2 PFTYSIEATRNLATTERCIQDIRNAPVRNRSTQFQLAQQNMLAYTFGEVIPGFASAGINGMDYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLAEGRSAVHRAIRELYVPPTAADLARRFFAFLNERMELVNG 339
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        


Chain C from PDB  Type:PROTEIN  Length:335
 aligned with Q9F6L0_STRGR | Q9F6L0 from UniProtKB/TrEMBL  Length:339

    Alignment length:338
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
         Q9F6L0_STRGR     2 PFTYSIEATRNLATTERCIQDIRNAPVRNRSTQFQLAQQNMLAYTFGEVIPGFASAGINGMNYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLAEGRSAVHRAIRELYVPPTAADLARRFFAFLNERMELVNG 339
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh.eee............eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhh.eeeee.....hhhhhhhhhhhhhhhhhhhhhhh...........eeeee.hhhhh.hhhhhh.....hhhhhhhhhhhhhhhh...hhh.eeeeeee........hhhhhhhhhhhhhhhhhhhh.....eeee......hhhhhhh.........---........eee...hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mq6 C   2 PFTYSIEATRNLATTERCIQDIRNAPVRNRSTQFQLAQQNMLAYTFGEVIPGFASAGINGMDYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLA---SAVHRAIRELYVPPTAADLARRFFAFLNERMELVNG 339
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291        |-  |    311       321       331        
                                                                                                                                                                                                                                                                                                                                    300 304                                   


Chain D from PDB  Type:PROTEIN  Length:333
 aligned with Q9F6L0_STRGR | Q9F6L0 from UniProtKB/TrEMBL  Length:339

    Alignment length:338
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
         Q9F6L0_STRGR     2 PFTYSIEATRNLATTERCIQDIRNAPVRNRSTQFQLAQQNMLAYTFGEVIPGFASAGINGMNYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLAEGRSAVHRAIRELYVPPTAADLARRFFAFLNERMELVNG 339
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh.eee..-----.....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhh.eeeee.....hhhhhhhhhhhhhhhhhhhhhhh...........eeeee.hhhhh.hhhhh......hhhhhhhhhhhhhhhh...hhh.eeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhh...hhhhhhh..........eee...hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mq6 D   2 PFTYSIEATRNLATTERCIQDIR-----NRSTQFQLAQQNMLAYTFGEVIPGFASAGINGMDYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLAEGRSAVHRAIRELYVPPTAADLARRFFAFLNERMELVNG 339
                                    11        21  |     31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
                                                 24    30                                                                                                                                                                                                                                                                                                                     


Chain E from PDB  Type:PROTEIN  Length:333
 aligned with Q9F6L0_STRGR | Q9F6L0 from UniProtKB/TrEMBL  Length:339

    Alignment length:338
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
         Q9F6L0_STRGR     2 PFTYSIEATRNLATTERCIQDIRNAPVRNRSTQFQLAQQNMLAYTFGEVIPGFASAGINGMNYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLAEGRSAVHRAIRELYVPPTAADLARRFFAFLNERMELVNG 339
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh.hhhhh.eee...-----....eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhh.eeeee.....hhhhhhhhhhhhhhhhhhhhhhhh..........eeeee.hhhhh.hhhhhh.....hhhhhhhhhhhhhhhh...hhh.eeeeeee....hhhhhhhhhhhhhhhhhhhhhhh......eeee......hhhhhhh...hhhhhhhh.........eee...hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mq6 E   2 PFTYSIEATRNLATTERCIQDIRN-----RSTQFQLAQQNMLAYTFGEVIPGFASAGINGMDYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLAEGRSAVHRAIRELYVPPTAADLARRFFAFLNERMELVNG 339
                                    11        21   |    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
                                                  25    31                                                                                                                                                                                                                                                                                                                    


Chain F from PDB  Type:PROTEIN  Length:338
 aligned with Q9F6L0_STRGR | Q9F6L0 from UniProtKB/TrEMBL  Length:339

    Alignment length:338
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
         Q9F6L0_STRGR     2 PFTYSIEATRNLATTERCIQDIRNAPVRNRSTQFQLAQQNMLAYTFGEVIPGFASAGINGMNYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLAEGRSAVHRAIRELYVPPTAADLARRFFAFLNERMELVNG 339
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh.hhhhh.eee............eeehhhhhhhhhhh.......hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhh.eeeee.....hhhhhhhhhhhhhhhhhhhhhhh...........eeeee.hhhhh.hhhhh......hhhhhhhhhhhhhhhh...hhh.eeeeeee........hhhhhhhhhhhhhhhh.........eeee......hhhhhhh...hhhhhhhh.........eee...hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mq6 F   2 PFTYSIEATRNLATTERCIQDIRNAPVRNRSTQFQLAQQNMLAYTFGEVIPGFASAGINGMDYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLAEGRSAVHRAIRELYVPPTAADLARRFFAFLNERMELVNG 339
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        


Chain G from PDB  Type:PROTEIN  Length:335
 aligned with Q9F6L0_STRGR | Q9F6L0 from UniProtKB/TrEMBL  Length:339

    Alignment length:338
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
         Q9F6L0_STRGR     2 PFTYSIEATRNLATTERCIQDIRNAPVRNRSTQFQLAQQNMLAYTFGEVIPGFASAGINGMNYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLAEGRSAVHRAIRELYVPPTAADLARRFFAFLNERMELVNG 339
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh.hhhhh.eee............eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhh.eeeee.....hhhhhhhhhhhhhhhhhhhhhhhh..........eeeee.hhhhh.hhhhhh.....hhhhhhhhhhhhhhhh...hhh.eeeeeee....hhhhhhhhhhhhhhhhhhhhh........eeee......hhhhhhh...hhhhhhh.---.......ee...hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mq6 G   2 PFTYSIEATRNLATTERCIQDIRNAPVRNRSTQFQLAQQNMLAYTFGEVIPGFASAGINGMDYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLAEG---VHRAIRELYVPPTAADLARRFFAFLNERMELVNG 339
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301|   |  311       321       331        
                                                                                                                                                                                                                                                                                                                                      302 306                                 


Chain H from PDB  Type:PROTEIN  Length:336
 aligned with Q9F6L0_STRGR | Q9F6L0 from UniProtKB/TrEMBL  Length:339

    Alignment length:338
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
         Q9F6L0_STRGR     2 PFTYSIEATRNLATTERCIQDIRNAPVRNRSTQFQLAQQNMLAYTFGEVIPGFASAGINGMNYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLAEGRSAVHRAIRELYVPPTAADLARRFFAFLNERMELVNG 339
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------------------------Bse634I-3mq6H01 H:48-332                                                                                                                                                                                                                                                                     ------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------Bse634I-3mq6H02 H:48-332                                                                                                                                                                                                                                                                     ------- Pfam domains (2)
           Pfam domains (3) ----------------------------------------------Bse634I-3mq6H03 H:48-332                                                                                                                                                                                                                                                                     ------- Pfam domains (3)
           Pfam domains (4) ----------------------------------------------Bse634I-3mq6H04 H:48-332                                                                                                                                                                                                                                                                     ------- Pfam domains (4)
           Pfam domains (5) ----------------------------------------------Bse634I-3mq6H05 H:48-332                                                                                                                                                                                                                                                                     ------- Pfam domains (5)
           Pfam domains (6) ----------------------------------------------Bse634I-3mq6H06 H:48-332                                                                                                                                                                                                                                                                     ------- Pfam domains (6)
           Pfam domains (7) ----------------------------------------------Bse634I-3mq6H07 H:48-332                                                                                                                                                                                                                                                                     ------- Pfam domains (7)
           Pfam domains (8) ----------------------------------------------Bse634I-3mq6H08 H:48-332                                                                                                                                                                                                                                                                     ------- Pfam domains (8)
         Sec.struct. author ....hhhhhhh.hhhhh.eee............eeehhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhh.eeeee.....hhhhhhhhhhhhhhhhhhhhhh............eeeee.hhhhh.hhhhhh.....hhhhhhhhhhhhhhhh.......eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh.....eeee.......hhhhhh...........--.......eee...hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mq6 H   2 PFTYSIEATRNLATTERCIQDIRNAPVRNRSTQFQLAQQNMLAYTFGEVIPGFASAGINGMDYRDVIGRPVENAVTEGTHFFRDDFRVDSNAKAKVAGDIFEIVSSAVMWNCAARWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSLLVPESQEVIEEFRAGLRKDGLGLPTSTPDLAVVVLPEEFQNDEMWREEIAGLTRPNQILLSGAYQRLQGRVQPGEISLAVAFKRSLRSDRLYQPLYEANVMQLLLEGKLGAPKVEFEVHTLAPEGTNAFVTYEAASLYGLAEG--AVHRAIRELYVPPTAADLARRFFAFLNERMELVNG 339
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301|  |   311       321       331        
                                                                                                                                                                                                                                                                                                                                      302  |                                  
                                                                                                                                                                                                                                                                                                                                         305                                  


Chain K from PDB  Type:DNA  Length:17
                                                 
                 3mq6 K   1 AAGTCCACCGGTGGACT  17
                                    10       


Chain L from PDB  Type:DNA  Length:17
                                                 
                 3mq6 L   1 AAGTCCACCGGTGGACT  17
                                    10       


Chain M from PDB  Type:DNA  Length:17
                                                 
                 3mq6 M   1 AAGTCCACCGGTGGACT  17
                                    10       


Chain N from PDB  Type:DNA  Length:17
                                                 
                 3mq6 N   1 AAGTCCACCGGTGGACT  17
                                    10       


Chain O from PDB  Type:DNA  Length:17
                                                 
                 3mq6 O   1 AAGTCCACCGGTGGACT  17
                                    10       


Chain P from PDB  Type:DNA  Length:16
                                                
                 3mq6 P   2 AGTCCACCGGTGGACT  17
                                    11      


Chain Q from PDB  Type:DNA  Length:17
                                                 
                 3mq6 Q   1 AAGTCCACCGGTGGACT  17
                                    10       


Chain R from PDB  Type:DNA  Length:17
                                                 
                 3mq6 R   1 AAGTCCACCGGTGGACT  17
                                    10
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MQ6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MQ6)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: no clan defined [family: Bse634I] (5)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q9F6L0_STRGR | Q9F6L0)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0009036    Type II site-specific deoxyribonuclease activity    Catalysis of the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates and 3' hydroxyls. Cleavage is dependent on the presence in the DNA of a specific recognition site; cleavage occurs at or very near this recognition site.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0009307    DNA restriction-modification system    A defense process found in many bacteria and archaea that protects the organism from invading foreign DNA by cleaving it with a restriction endonuclease. The organism's own DNA is protected by methylation of a specific nucleotide, which occurs immediately following replication, in the same target site as the restriction enzyme.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9F6L0_STRGR | Q9F6L0: 3dpg 3dvo 3dw9 3mqy 3n78 3n7b 4c3g

(-) Related Entries Specified in the PDB File

3dpg SGRAI WITH NONCOGNATE DNA BOUND
3dvo SGRAI WITH COGNATE DNA AND CALCIUM BOUND
3dw9 SGRAI WITH COGNATE DNA AND MANGANESE BOUND