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(-) Description

Title :  CRYSTAL STRUCTURE OF NADH DEHYDROGENASE SUBUNIT C (TFU_2693) FROM THERMOBIFIDA FUSCA YX-ER1 AT 2.65 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  29 Mar 10  (Deposition) - 12 May 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Nadh Dehydrogenase Subunit C (Tfu_2693 From Thermobifida Fusca Yx-Er1 At 2. 65 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NADH DEHYDROGENASE, SUBUNIT C
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TFU_2693
    Organism Scientific: THERMOBIFIDA FUSCA
    Organism Taxid: 269800
    Strain: YX

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1CO1Ligand/IonCOBALT (II) ION
2HEZ1Ligand/IonHEXANE-1,6-DIOL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2HEZ1Ligand/IonHEXANE-1,6-DIOL
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CO-1Ligand/IonCOBALT (II) ION
2HEZ2Ligand/IonHEXANE-1,6-DIOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:142 , ASP A:174BINDING SITE FOR RESIDUE CO A 213
2AC2SOFTWAREGLY A:140 , PHE A:199 , PHE A:200 , HOH A:220BINDING SITE FOR RESIDUE HEZ A 214

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MCR)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg A:63 -Pro A:64

 Sequence-Structure Mapping

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(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:154
 aligned with Q47LE6_THEFY | Q47LE6 from UniProtKB/TrEMBL  Length:252

    Alignment length:154
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207    
         Q47LE6_THEFY    58 PAAAQRPYSDPSDPRTAYFDEVADALERSLKEIGTPYDTAISRVVVDRGEITFHVQREHLLDVATRLRDDPALRFELCLGVTGVHYPEDEGNELHAVYALRSITHNYEIRLEVSCPDSDPHIPSIVSVYPTNDWHEREAWDFFGIIFDGHPALT 211
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------Complex1_30kDa-3mcrA01 A:119-211                                                              Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhh..hhhhheeeeeee..eeeeee...hhhhhhhhhhhh......eeeeeeeee........eeeeeeeee....eeeeeeeee.....eee.......hhhhhhhhhhhhhh.eee.hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mcr A  58 PAAAQRPYSDPSDPRTAYFDEVADALERSLKEIGTPYDTAISRVVVDRGEITFHVQREHLLDVATRLRDDPALRFELCLGVTGVHYPEDEGNELHAVYALRSITHNYEIRLEVSCPDSDPHIPSIVSVYPTNDWHEREAWDFFGIIFDGHPALT 211
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MCR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MCR)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: Complex1_30kDa] (2)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q47LE6_THEFY | Q47LE6)
molecular function
    GO:0050136    NADH dehydrogenase (quinone) activity    Catalysis of the reaction: NADH + H+ + a quinone = NAD+ + a quinol.
    GO:0008137    NADH dehydrogenase (ubiquinone) activity    Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016651    oxidoreductase activity, acting on NAD(P)H    Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0048038    quinone binding    Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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