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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUCOKINASE (BDI_1628) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 3.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  29 Mar 10  (Deposition) - 12 May 10  (Release) - 12 May 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Glucokinase (Bdi_1628) From Parabacteroides Distasonis Atcc 8503 At 3. 00 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUCOKINASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BDI_1628
    Organism Scientific: PARABACTEROIDES DISTASONIS
    Organism Taxid: 435591
    Strain: ATCC 8503 / DSM 20701 / NCTC 11152

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1FMT1Ligand/IonFORMIC ACID
2GOL2Ligand/IonGLYCEROL
3MSE9Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 24)
No.NameCountTypeFull Name
1FMT2Ligand/IonFORMIC ACID
2GOL4Ligand/IonGLYCEROL
3MSE18Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:266BINDING SITE FOR RESIDUE GOL A 366
2AC2SOFTWAREGLY A:117 , GLY A:159 , ALA A:160 , TYR A:178BINDING SITE FOR RESIDUE GOL A 367
3AC3SOFTWAREGLU A:132 , ILE A:133 , ARG A:136 , LEU A:304 , ASP A:305 , THR A:341 , LYS A:344BINDING SITE FOR RESIDUE FMT A 368

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MCP)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:75 -Pro A:76

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MCP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MCP)

(-) Exons   (0, 0)

(no "Exon" information available for 3MCP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:355
 aligned with A6LCG6_PARD8 | A6LCG6 from UniProtKB/TrEMBL  Length:365

    Alignment length:363
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360   
         A6LCG6_PARD8     1 MMYTNDNRIVMTLDAGGTNFVFSAIQGGKEIADPVVLPACADCLDKCLGNLVEGFKAIQADLPEAPVAISFAFPGPADYQAGIIGDLPNFPSFRGGVALGPFLEDIFGIPVFINNDGSLFAYGEALTGVLPEINRRLREAGSTKRYKNLLGVTLGTGFGAGVVIDGELLRGDNAAGGYVWCLRNKKYPEYIVEESVSIRAVMRVYAERSGDAGARTPKEIFEIAEGIRPGNREAAIAAFEELGEMAGDALASAITLIDGLIVIGGGLSGASKYILPVLLKEMNAQTGMMDGARFGRLQKEVYDLDDEKSFAGFARGEAVEVLVPGTNRKVGYDPCKRIGVTFSKQGANRSIAMGAYVFALNHL 363
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -----------ROK-3mcpA01 A:12-186                                                                                                                                                           --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeee....eeeeeeee..ee....eeee....hhhhhhhhhhhhhhhhhh.......eeeee....ee....ee.....hhhhh...hhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeee...eeeeeee..ee......................hhhhh.hhhhhhhhhhhhh......hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeehhhhhhhhhhhhhhhhhhhhhh...--------..eeee..hhhhhhhhhhh..eeee......eeee....eeeeee...hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mcp A   1 mmYTNDNRIVmTLDAGGTNFVFSAIQGGKEIADPVVLPACADCLDKCLGNLVEGFKAIQAGLPEAPVAISFAFPGPADYQAGIIGDLPNFPSFRGGVALGPFLEDIFGIPVFINNDGSLFAYGEALTGVLPEINRRLREAGSTKRYKNLLGVTLGTGFGAGVVIDGELLRGDNAAGGYVWCLRNKKYPEYIVEESVSIRAVmRVYAERSGDAGARTPKEIFEIAEGIRPGNREAAIAAFEELGEmAGDALASAITLIDGLIVIGGGLSGASKYILPVLLKEmNAQTGmm--------QKEVYDLDEEKSFAGFARGEAVEVLVPGTNRKVGYDPCKRIGVTFSKQGANRSIAmGAYVFALNHL 363
                            ||      10|       20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200 |     210       220       230       240    |  250       260       270       280 |     ||-       300       310       320       330       340       350  |    360   
                            ||       11-MSE                                                                                                                                                                                        202-MSE                                    245-MSE                              282-MSE ||      298                                                    353-MSE      
                            1-MSE                                                                                                                                                                                                                                                                                        288-MSE                                                                       
                             2-MSE                                                                                                                                                                                                                                                                                        289-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MCP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MCP)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: Actin_ATPase (173)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (A6LCG6_PARD8 | A6LCG6)
molecular function
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.

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