3M8A - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Biological Unit 7 (Jmol Viewer)

Biological Unit 8 (Jmol Viewer)

Biological Unit 9 (Jmol Viewer)

Biological Unit 10 (Jmol Viewer)

Biological Unit 11 (Jmol Viewer)

Biological Unit 12 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF SWINE FLU VIRUS NS1 N-TERMINAL RNA BINDING DOMAIN FROM H1N1 INFLUENZA A/CALIFORNIA/07/2009

Authors :   J. S. Brunzelle, Z. Wawrzak, T. Skarina, A. Savchenko, W. F. Anderson, C Structural Genomics Of Infectious Diseases (Csgid)

Date :   17 Mar 10 (Deposition) - 28 Apr 10 (Release) - 14 Dec 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)
Biol. Unit 7: G  (1x)
Biol. Unit 8: H  (1x)
Biol. Unit 9: I  (1x)
Biol. Unit 10: J  (1x)
Biol. Unit 11: K  (1x)
Biol. Unit 12: L  (1x)

Keywords :   Ns1, N-Terminal Rna Binding Domain, Influenza A Virus, H1N1, Host Cytoplasm, Host Nucleus, Host-Virus Interaction, Interferon Antiviral System Evasion, Rna-Binding, Center For Structural Genomics Of Infectious Diseases, Csgid, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. S. Brunzelle, Z. Wawrzak, T. Skarina, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of Swine Flu Virus Ns1 N-Terminal Rna Binding Domain From H1N1 Influenza A/California/07/2009
To Be Published
PubMed: search

Molecule 1 - NONSTRUCTURAL PROTEIN 1
	Chains	:	A, B, C, D, E, F, G, H, I, J, K, L
	Engineered	:	YES
	Fragment	:	N-TERMINAL RNA BINDING DOMAIN (UNP RESIDUES 1-73)
	Organism Scientific	:	INFLUENZA A VIRUS
	Organism Taxid	:	641809
	Strain	:	A/CALIFORNIA/07/2009(H1N1)

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F
Biological Unit 7 (1x)	:							G
Biological Unit 8 (1x)	:								H
Biological Unit 9 (1x)	:									I
Biological Unit 10 (1x)	:										J
Biological Unit 11 (1x)	:											K
Biological Unit 12 (1x)	:												L

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 14)

No.	Name	Count	Type	Full Name
1	ACT	4	Ligand/Ion	ACETATE ION
2	MLI	6	Ligand/Ion	MALONATE ION
3	NA	4	Ligand/Ion	SODIUM ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	MLI	-1	Ligand/Ion	MALONATE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	MLI	1	Ligand/Ion	MALONATE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	MLI	1	Ligand/Ion	MALONATE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	MLI	1	Ligand/Ion	MALONATE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 5 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	MLI	-1	Ligand/Ion	MALONATE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 6 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	MLI	-1	Ligand/Ion	MALONATE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 7 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	MLI	1	Ligand/Ion	MALONATE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 8 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	MLI	-1	Ligand/Ion	MALONATE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 9 (0, 0)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	MLI	-1	Ligand/Ion	MALONATE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 10 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	MLI	1	Ligand/Ion	MALONATE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 11 (0, 0)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	MLI	-1	Ligand/Ion	MALONATE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 12 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	MLI	1	Ligand/Ion	MALONATE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:19 , SER A:42 , ARG A:46 , HOH A:1049 , HOH A:1050	BINDING SITE FOR RESIDUE ACT A 100
02	AC2	SOFTWARE	ASP B:39 , SER B:42 , LEU B:43 , ARG B:46 , HOH B:1047 , HOH B:1048 , ARG H:35	BINDING SITE FOR RESIDUE MLI B 101
03	AC3	SOFTWARE	ASP C:12 , ASP C:39 , SER C:42 , LEU C:43 , ARG C:46 , HOH C:788 , HOH C:1051 , ARG F:35	BINDING SITE FOR RESIDUE MLI C 100
04	AC4	SOFTWARE	MET C:1 , HOH C:254 , HOH C:381 , ASN H:25 , HOH H:106 , HOH H:924	BINDING SITE FOR RESIDUE NA C 101
05	AC5	SOFTWARE	ASP D:12 , ARG D:19 , ASP D:39 , SER D:42 , LEU D:43 , ARG D:46 , HOH D:102 , HOH D:1052 , ARG E:35	BINDING SITE FOR RESIDUE MLI D 100
06	AC6	SOFTWARE	ARG D:35 , SER E:42 , ARG E:46	BINDING SITE FOR RESIDUE ACT E 100
07	AC7	SOFTWARE	ASP F:39 , SER F:42 , ARG F:46	BINDING SITE FOR RESIDUE ACT F 100
08	AC8	SOFTWARE	ARG A:35 , ASP G:12 , ASP G:39 , SER G:42 , ARG G:46 , HOH G:783	BINDING SITE FOR RESIDUE MLI G 100
09	AC9	SOFTWARE	ARG B:35 , SER H:42 , ARG H:46 , HOH H:782 , HOH H:786 , HOH H:792	BINDING SITE FOR RESIDUE ACT H 100
10	BC1	SOFTWARE	MET I:1 , THR I:5 , ASP L:29 , HOH L:1055	BINDING SITE FOR RESIDUE NA I 100
11	BC2	SOFTWARE	MET J:1 , HOH J:1044	BINDING SITE FOR RESIDUE NA J 100
12	BC3	SOFTWARE	ASP J:12 , ARG J:19 , ASP J:39 , SER J:42 , ARG J:46 , HOH J:75 , HOH J:784 , HOH J:1057 , ARG K:35	BINDING SITE FOR RESIDUE MLI J 101
13	BC4	SOFTWARE	ASN D:25 , HOH D:482 , MET L:1 , HOH L:517	BINDING SITE FOR RESIDUE NA L 100
14	BC5	SOFTWARE	ARG I:35 , ASP L:12 , ARG L:19 , ASP L:39 , SER L:42 , LEU L:43 , ARG L:46 , HOH L:781 , HOH L:823	BINDING SITE FOR RESIDUE MLI L 101

(no "SS Bond" information available for 3M8A)

(no "Cis Peptide Bond" information available for 3M8A)

(no "SAP(SNP)/Variant" information available for 3M8A)

(no "PROSITE Motif" information available for 3M8A)

(no "Exon" information available for 3M8A)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:71
 aligned with C3W611_9INFA | C3W611 from UniProtKB/TrEMBL  Length:219

    Alignment length:71
                                    10        20        30        40        50        60        70 
          C3W611_9INFA    1 MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKE 71
               SCOP domains d3m8aa_ A: automated matches                                            SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  3m8a A  1 MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKE 71
                                    10        20        30        40        50        60        70

Chain B from PDB  Type:PROTEIN  Length:71
 aligned with C3W611_9INFA | C3W611 from UniProtKB/TrEMBL  Length:219

    Alignment length:71
                                    10        20        30        40        50        60        70 
          C3W611_9INFA    1 MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKE 71
               SCOP domains d3m8ab_ B: automated matches                                            SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  3m8a B  1 MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKE 71
                                    10        20        30        40        50        60        70

Chain C from PDB  Type:PROTEIN  Length:73
 aligned with C3W611_9INFA | C3W611 from UniProtKB/TrEMBL  Length:219

    Alignment length:73
                             1                                                                       
                             |       9        19        29        39        49        59        69   
          C3W611_9INFA    - -MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEE 72
               SCOP domains d3m8ac_ C: automated matches                                              SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  3m8a C  0 AMDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEE 72
                                     9        19        29        39        49        59        69

Chain D from PDB  Type:PROTEIN  Length:71
 aligned with C3W611_9INFA | C3W611 from UniProtKB/TrEMBL  Length:219

    Alignment length:71
                                    10        20        30        40        50        60        70 
          C3W611_9INFA    1 MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKE 71
               SCOP domains d3m8ad_ D: automated matches                                            SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  3m8a D  1 MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKE 71
                                    10        20        30        40        50        60        70

Chain E from PDB  Type:PROTEIN  Length:72
 aligned with C3W611_9INFA | C3W611 from UniProtKB/TrEMBL  Length:219

    Alignment length:72
                                    10        20        30        40        50        60        70  
          C3W611_9INFA    1 MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEE 72
               SCOP domains d3m8ae_ E: automated matches                                             SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  3m8a E  1 MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEE 72
                                    10        20        30        40        50        60        70

Chain F from PDB  Type:PROTEIN  Length:72
 aligned with C3W611_9INFA | C3W611 from UniProtKB/TrEMBL  Length:219

    Alignment length:72
                                    10        20        30        40        50        60        70  
          C3W611_9INFA    1 MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEE 72
               SCOP domains d3m8af_ F: automated matches                                             SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  3m8a F  1 MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEE 72
                                    10        20        30        40        50        60        70

Chain G from PDB  Type:PROTEIN  Length:73
 aligned with C3W611_9INFA | C3W611 from UniProtKB/TrEMBL  Length:219

    Alignment length:73
                             1                                                                       
                             |       9        19        29        39        49        59        69   
          C3W611_9INFA    - -MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEE 72
               SCOP domains d3m8ag_ G: automated matches                                              SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  3m8a G  0 AMDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEE 72
                                     9        19        29        39        49        59        69

Chain H from PDB  Type:PROTEIN  Length:71
 aligned with C3W611_9INFA | C3W611 from UniProtKB/TrEMBL  Length:219

    Alignment length:71
                                    11        21        31        41        51        61        71 
          C3W611_9INFA    2 DSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEE 72
               SCOP domains d3m8ah_ H: automated matches                                            SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  3m8a H  2 DSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEE 72
                                    11        21        31        41        51        61        71

Chain I from PDB  Type:PROTEIN  Length:72
 aligned with C3W611_9INFA | C3W611 from UniProtKB/TrEMBL  Length:219

    Alignment length:72
                                    10        20        30        40        50        60        70  
          C3W611_9INFA    1 MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEE 72
               SCOP domains d3m8ai_ I: automated matches                                             SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  3m8a I  1 MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEE 72
                                    10        20        30        40        50        60        70

Chain J from PDB  Type:PROTEIN  Length:73
 aligned with C3W611_9INFA | C3W611 from UniProtKB/TrEMBL  Length:219

    Alignment length:73
                             1                                                                       
                             |       9        19        29        39        49        59        69   
          C3W611_9INFA    - -MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEE 72
               SCOP domains d3m8aj_ J: automated matches                                              SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  3m8a J  0 AMDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEE 72
                                     9        19        29        39        49        59        69

Chain K from PDB  Type:PROTEIN  Length:70
 aligned with C3W611_9INFA | C3W611 from UniProtKB/TrEMBL  Length:219

    Alignment length:70
                                    10        20        30        40        50        60        70
          C3W611_9INFA    1 MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILK 70
               SCOP domains d3m8ak_ K: automated matches                                           SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  3m8a K  1 MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILK 70
                                    10        20        30        40        50        60        70

Chain L from PDB  Type:PROTEIN  Length:73
 aligned with C3W611_9INFA | C3W611 from UniProtKB/TrEMBL  Length:219

    Alignment length:73
                             1                                                                       
                             |       9        19        29        39        49        59        69   
          C3W611_9INFA    - -MDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEE 72
               SCOP domains d3m8al_ L: automated matches                                              SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  3m8a L  0 AMDSNTMSSFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEE 72
                                     9        19        29        39        49        59        69

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: S15/NS1 RNA-binding domain (66)

Superfamily: S15/NS1 RNA-binding domain (66)

Family: N-terminal, RNA-binding domain of nonstructural protein NS1 (9)

Protein domain: automated matches (6)

Influenza A virus [TaxId: 641809] (1)

1a	d3m8aa_	A:
1b	d3m8ab_	B:
1c	d3m8ak_	K:
1d	d3m8al_	L:
1e	d3m8ac_	C:
1f	d3m8ad_	D:
1g	d3m8ae_	E:
1h	d3m8af_	F:
1i	d3m8ag_	G:
1j	d3m8ah_	H:
1k	d3m8ai_	I:
1l	d3m8aj_	J:

(no "CATH Domain" information available for 3M8A)

(no "Pfam Domain" information available for 3M8A)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J,K,L (C3W611_9INFA | C3W611)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
	GO:0030683	evasion or tolerance by virus of host immune response	Any process, either active or passive, by which a virus avoids the effects of the host organism's immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0039580	suppression by virus of host PKR activity	Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host PKR (protein kinase regulated by RNA) activity. Activation of PKR involves dsRNA binding followed by autophosphorylation. Phosphorylated PKR can then phosphorylate downstream targets such as the translation initiation factor eIF2 to inhibit protein synthesis. Viruses encode a number of mechanisms to inhibit the host antiviral response via PKR, including direct interaction with PKR, promoting degradation of PKR or altering the subcellular location of PKR.
	GO:0039540	suppression by virus of host RIG-I activity	Any process in which a virus stops, prevents, or reduces the activity of RIG-1 (also known as DDX58). The cytoplasmic pattern recognition RIG-I recognizes viral RNA synthesized during active viral replication and signals to protect the host against viral infection, for example by inducing the expression of antiviral cytokines.
	GO:0039657	suppression by virus of host gene expression	Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of gene expression in the host organism. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
	GO:0039503	suppression by virus of host innate immune response	Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the innate immune response of the host organism, the host's first line of defense.
	GO:0039524	suppression by virus of host mRNA processing	Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of mRNA processing in the host cell. mRNA processing is the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
	GO:0039502	suppression by virus of host type I interferon-mediated signaling pathway	Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of type I interferon-mediated signaling in the host organism. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0030430	host cell cytoplasm	The cytoplasm of a host cell.
	GO:0042025	host cell nucleus	A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.

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	C3W611_9INFA \| C3W611	:	3m5r

3m5r	CRYSTAL STRUCTURE OF SWINE FLU VIRUS NS1 EFFECTOR DOMAIN FROM H1N1 INFLUENZA A/CALIFORNIA/07/2009 RELATED ID: IDP90271 RELATED DB: TARGETDB

Description

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Structural Features

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Ligands, Modified Residues, Ions (3, 14)

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Related Entries Specified in the PDB File