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(-) Description

Title :  CRYSTAL STRUCTURE OF HTLV PROTEASE COMPLEXED WITH THE INHIBITOR, KNI-10562
 
Authors :  T. Satoh, M. Li, J. Nguyen, Y. Kiso, A. Wlodawer, A. Gustchina
Date :  25 Jan 10  (Deposition) - 14 Jul 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.96
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Biol. Unit 6:  K,L  (1x)
Keywords :  Hydrolase, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Satoh, M. Li, J. T. Nguyen, Y. Kiso, A. Gustchina, A. Wlodawer
Crystal Structures Of Inhibitor Complexes Of Human T-Cell Leukemia Virus (Htlv-1) Protease.
J. Mol. Biol. V. 401 626 2010
PubMed-ID: 20600105  |  Reference-DOI: 10.1016/J.JMB.2010.06.052

(-) Compounds

Molecule 1 - PROTEASE
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHTLVDELTA9
    Expression System Strain: ROSETTA2(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PRT
    Mutation: YES
    Organism Scientific: HUMAN T-LYMPHOTROPIC VIRUS 1
    Organism Taxid: 11908

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): AB          
Biological Unit 2 (1x):   CD        
Biological Unit 3 (1x):     EF      
Biological Unit 4 (1x):       GH    
Biological Unit 5 (1x):         IJ  
Biological Unit 6 (1x):           KL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1E136Ligand/IonN-[(2S,3S)-4-{(4R)-4-[(2,2-DIMETHYLPROPYL)CARBAMOYL]-5,5-DIMETHYL-1,3-THIAZOLIDIN-3-YL}-3-HYDROXY-4-OXO-1-PHENYLBUTAN-2-YL]-N~2~-{(2S)-2-[(METHOXYCARBONYL)AMINO]-2-PHENYLACETYL}-3-METHYL-L-VALINAMIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1E131Ligand/IonN-[(2S,3S)-4-{(4R)-4-[(2,2-DIMETHYLPROPYL)CARBAMOYL]-5,5-DIMETHYL-1,3-THIAZOLIDIN-3-YL}-3-HYDROXY-4-OXO-1-PHENYLBUTAN-2-YL]-N~2~-{(2S)-2-[(METHOXYCARBONYL)AMINO]-2-PHENYLACETYL}-3-METHYL-L-VALINAMIDE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1E131Ligand/IonN-[(2S,3S)-4-{(4R)-4-[(2,2-DIMETHYLPROPYL)CARBAMOYL]-5,5-DIMETHYL-1,3-THIAZOLIDIN-3-YL}-3-HYDROXY-4-OXO-1-PHENYLBUTAN-2-YL]-N~2~-{(2S)-2-[(METHOXYCARBONYL)AMINO]-2-PHENYLACETYL}-3-METHYL-L-VALINAMIDE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1E131Ligand/IonN-[(2S,3S)-4-{(4R)-4-[(2,2-DIMETHYLPROPYL)CARBAMOYL]-5,5-DIMETHYL-1,3-THIAZOLIDIN-3-YL}-3-HYDROXY-4-OXO-1-PHENYLBUTAN-2-YL]-N~2~-{(2S)-2-[(METHOXYCARBONYL)AMINO]-2-PHENYLACETYL}-3-METHYL-L-VALINAMIDE
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1E131Ligand/IonN-[(2S,3S)-4-{(4R)-4-[(2,2-DIMETHYLPROPYL)CARBAMOYL]-5,5-DIMETHYL-1,3-THIAZOLIDIN-3-YL}-3-HYDROXY-4-OXO-1-PHENYLBUTAN-2-YL]-N~2~-{(2S)-2-[(METHOXYCARBONYL)AMINO]-2-PHENYLACETYL}-3-METHYL-L-VALINAMIDE
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1E131Ligand/IonN-[(2S,3S)-4-{(4R)-4-[(2,2-DIMETHYLPROPYL)CARBAMOYL]-5,5-DIMETHYL-1,3-THIAZOLIDIN-3-YL}-3-HYDROXY-4-OXO-1-PHENYLBUTAN-2-YL]-N~2~-{(2S)-2-[(METHOXYCARBONYL)AMINO]-2-PHENYLACETYL}-3-METHYL-L-VALINAMIDE
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1E131Ligand/IonN-[(2S,3S)-4-{(4R)-4-[(2,2-DIMETHYLPROPYL)CARBAMOYL]-5,5-DIMETHYL-1,3-THIAZOLIDIN-3-YL}-3-HYDROXY-4-OXO-1-PHENYLBUTAN-2-YL]-N~2~-{(2S)-2-[(METHOXYCARBONYL)AMINO]-2-PHENYLACETYL}-3-METHYL-L-VALINAMIDE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:10 , ASP A:32 , GLY A:34 , ALA A:35 , MET A:37 , VAL A:39 , LEU A:57 , HOH A:117 , LEU B:30 , ASP B:32 , GLY B:34 , ALA B:35 , ASP B:36 , MET B:37 , VAL B:56 , LEU B:57 , GLY B:58 , ALA B:59 , TRP B:98 , HOH B:123 , HOH B:146 , HOH B:374BINDING SITE FOR RESIDUE E13 B 117
2AC2SOFTWAREARG C:10 , LEU C:30 , ASP C:32 , GLY C:34 , ALA C:35 , ASP C:36 , MET C:37 , VAL C:39 , VAL C:56 , LEU C:57 , GLY C:58 , ALA C:59 , TRP C:98 , HOH C:118 , HOH C:835 , HOH C:836 , HOH C:837 , HOH C:840 , HOH C:841 , HOH C:842 , HOH C:843 , HOH C:844 , ARG D:10 , ASP D:32 , GLY D:34 , ALA D:35 , ASP D:36 , MET D:37 , VAL D:56 , LEU D:57 , GLY D:58 , ALA D:59 , LEU D:91 , TRP D:98 , HOH D:571BINDING SITE FOR RESIDUE E13 C 117
3AC3SOFTWARELEU E:30 , ASP E:32 , GLY E:34 , ALA E:35 , ASP E:36 , SER E:55 , VAL E:56 , LEU E:57 , GLY E:58 , ALA E:59 , HOH E:210 , ARG F:10 , ASP F:32 , GLY F:34 , ALA F:35 , MET F:37 , VAL F:39 , LEU F:57 , ALA F:59 , TRP F:98 , HOH F:117BINDING SITE FOR RESIDUE E13 E 117
4AC4SOFTWAREARG G:10 , LEU G:30 , ASP G:32 , GLY G:34 , ALA G:35 , ASP G:36 , MET G:37 , VAL G:56 , LEU G:57 , GLY G:58 , ALA G:59 , TRP G:98 , ILE G:100 , ARG H:10 , LEU H:30 , ASP H:32 , GLY H:34 , ALA H:35 , ASP H:36 , VAL H:39 , VAL H:56 , LEU H:57 , GLY H:58 , ALA H:59 , LEU H:91 , TRP H:98 , HOH H:118 , HOH H:529 , HOH H:838 , HOH H:839BINDING SITE FOR RESIDUE E13 H 117
5AC5SOFTWAREARG I:10 , LEU I:30 , ASP I:32 , GLY I:34 , ASP I:36 , MET I:37 , VAL I:56 , LEU I:57 , GLY I:58 , ALA I:59 , LEU I:91 , TRP I:98 , ARG J:10 , LEU J:30 , ASP J:32 , GLY J:34 , ALA J:35 , ASP J:36 , MET J:37 , VAL J:39 , VAL J:56 , LEU J:57 , GLY J:58 , ALA J:59 , LEU J:91 , HOH J:117BINDING SITE FOR RESIDUE E13 I 117
6AC6SOFTWAREARG K:10 , ASP K:32 , GLY K:34 , ALA K:35 , MET K:37 , LEU K:57 , ALA K:59 , LEU K:91 , TRP K:98 , HOH K:124 , LEU L:30 , ASP L:32 , GLY L:34 , ASP L:36 , VAL L:56 , LEU L:57 , GLY L:58 , ALA L:59 , TRP L:98 , HOH L:363BINDING SITE FOR RESIDUE E13 L 117

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LIN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3LIN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LIN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LIN)

(-) Exons   (0, 0)

(no "Exon" information available for 3LIN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:116
 aligned with Q82134_9DELA | Q82134 from UniProtKB/TrEMBL  Length:125

    Alignment length:116
                                    10        20        30        40        50        60        70        80        90       100       110      
         Q82134_9DELA     1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVLPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......eeeeeee......eeeeeee.......eee.hhh......ee..eee..eee...eee....eeee.......eee...eee......eehhhhhhhh..eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3lin A   1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
                                    10        20        30        40        50        60        70        80        90       100       110      


Chain B from PDB  Type:PROTEIN  Length:116
 aligned with Q82134_9DELA | Q82134 from UniProtKB/TrEMBL  Length:125

    Alignment length:116
                                    10        20        30        40        50        60        70        80        90       100       110      
         Q82134_9DELA     1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVLPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......eeeeeee......eeeeeee.......eee.hhh......ee..eee..eee...eee....eeee.......eee...eee......eehhhhhhhh..eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3lin B   1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
                                    10        20        30        40        50        60        70        80        90       100       110      


Chain C from PDB  Type:PROTEIN  Length:116
 aligned with Q82134_9DELA | Q82134 from UniProtKB/TrEMBL  Length:125

    Alignment length:116
                                    10        20        30        40        50        60        70        80        90       100       110      
         Q82134_9DELA     1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVLPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......eeeeeee......eeeeeee.......eee.hhh......ee..eee..eee...eee....eeee.......eee...eee......eehhhhhhhh..eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3lin C   1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
                                    10        20        30        40        50        60        70        80        90       100       110      


Chain D from PDB  Type:PROTEIN  Length:116
 aligned with Q82134_9DELA | Q82134 from UniProtKB/TrEMBL  Length:125

    Alignment length:116
                                    10        20        30        40        50        60        70        80        90       100       110      
         Q82134_9DELA     1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVLPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......eeeeeee......eeeeeee.......eee.hhh......ee..eee..eee...eee....eeee.......eee...eee......eehhhhhhhh..eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3lin D   1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
                                    10        20        30        40        50        60        70        80        90       100       110      


Chain E from PDB  Type:PROTEIN  Length:116
 aligned with Q82134_9DELA | Q82134 from UniProtKB/TrEMBL  Length:125

    Alignment length:116
                                    10        20        30        40        50        60        70        80        90       100       110      
         Q82134_9DELA     1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVLPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......eeeeeee......eeeeeee.......eee.hhh......ee..eee..eee...eee....eeee.......eee...eee......eehhhhhhhh..eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3lin E   1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
                                    10        20        30        40        50        60        70        80        90       100       110      


Chain F from PDB  Type:PROTEIN  Length:116
 aligned with Q82134_9DELA | Q82134 from UniProtKB/TrEMBL  Length:125

    Alignment length:116
                                    10        20        30        40        50        60        70        80        90       100       110      
         Q82134_9DELA     1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVLPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......eeeeeee......eeeeeee.......eee.hhh......ee..eee..eee...eee....eeee.......eee...eee......eehhhhhhhh..eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3lin F   1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
                                    10        20        30        40        50        60        70        80        90       100       110      


Chain G from PDB  Type:PROTEIN  Length:116
 aligned with Q82134_9DELA | Q82134 from UniProtKB/TrEMBL  Length:125

    Alignment length:116
                                    10        20        30        40        50        60        70        80        90       100       110      
         Q82134_9DELA     1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVLPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......eeeeeee......eeeeeee.......eee.hhh......ee..eee..eee...eee....eeee.......eee...eee......eehhhhhhhh..eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3lin G   1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
                                    10        20        30        40        50        60        70        80        90       100       110      


Chain H from PDB  Type:PROTEIN  Length:116
 aligned with Q82134_9DELA | Q82134 from UniProtKB/TrEMBL  Length:125

    Alignment length:116
                                    10        20        30        40        50        60        70        80        90       100       110      
         Q82134_9DELA     1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVLPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......eeeeeee......eeeeeee.......eee.hhh......ee..eee..eee...eee....eeee.......eee...eee......eehhhhhhhh..eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3lin H   1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
                                    10        20        30        40        50        60        70        80        90       100       110      


Chain I from PDB  Type:PROTEIN  Length:116
 aligned with Q82134_9DELA | Q82134 from UniProtKB/TrEMBL  Length:125

    Alignment length:116
                                    10        20        30        40        50        60        70        80        90       100       110      
         Q82134_9DELA     1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVLPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......eeeeeee......eeeeeee.......eee.hhh......ee..eee..eee...eee....eeee.......eee...eee......eehhhhhhhh..eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3lin I   1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
                                    10        20        30        40        50        60        70        80        90       100       110      


Chain J from PDB  Type:PROTEIN  Length:116
 aligned with Q82134_9DELA | Q82134 from UniProtKB/TrEMBL  Length:125

    Alignment length:116
                                    10        20        30        40        50        60        70        80        90       100       110      
         Q82134_9DELA     1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVLPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......eeeeeee......eeeeeee.......eee.hhh......ee..eee..eee...eee....eeee.......eee...eee......eehhhhhhhh..eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3lin J   1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
                                    10        20        30        40        50        60        70        80        90       100       110      


Chain K from PDB  Type:PROTEIN  Length:116
 aligned with Q82134_9DELA | Q82134 from UniProtKB/TrEMBL  Length:125

    Alignment length:116
                                    10        20        30        40        50        60        70        80        90       100       110      
         Q82134_9DELA     1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVLPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......eeeeeee......eeeeeee.......eee.hhh......ee..eee..eee...eee....eeee.......eee...eee......eehhhhhhhh..eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3lin K   1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
                                    10        20        30        40        50        60        70        80        90       100       110      


Chain L from PDB  Type:PROTEIN  Length:116
 aligned with Q82134_9DELA | Q82134 from UniProtKB/TrEMBL  Length:125

    Alignment length:116
                                    10        20        30        40        50        60        70        80        90       100       110      
         Q82134_9DELA     1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVLPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----RVP-3linL01 L:6-114                                                                                          -- Pfam domains (1)
           Pfam domains (2) -----RVP-3linL02 L:6-114                                                                                          -- Pfam domains (2)
           Pfam domains (3) -----RVP-3linL03 L:6-114                                                                                          -- Pfam domains (3)
           Pfam domains (4) -----RVP-3linL04 L:6-114                                                                                          -- Pfam domains (4)
           Pfam domains (5) -----RVP-3linL05 L:6-114                                                                                          -- Pfam domains (5)
           Pfam domains (6) -----RVP-3linL06 L:6-114                                                                                          -- Pfam domains (6)
           Pfam domains (7) -----RVP-3linL07 L:6-114                                                                                          -- Pfam domains (7)
           Pfam domains (8) -----RVP-3linL08 L:6-114                                                                                          -- Pfam domains (8)
           Pfam domains (9) -----RVP-3linL09 L:6-114                                                                                          -- Pfam domains (9)
          Pfam domains (10) -----RVP-3linL10 L:6-114                                                                                          -- Pfam domains (10)
          Pfam domains (11) -----RVP-3linL11 L:6-114                                                                                          -- Pfam domains (11)
          Pfam domains (12) -----RVP-3linL12 L:6-114                                                                                          -- Pfam domains (12)
         Sec.struct. author .eee.......eeeeeee......eeeeeee.......eee.hhh......ee..eee..eee...eee....eeee.......eee...eee......eehhhhhhhh..eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3lin L   1 PVIPLDPARRPVIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYLP 116
                                    10        20        30        40        50        60        70        80        90       100       110
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LIN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LIN)

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: Peptidase_AA (368)
(-)
Family: RVP (212)
(-)
Human T-lymphotropic virus 1 (6)
1aRVP-3linL01L:6-114
1bRVP-3linL02L:6-114
1cRVP-3linL03L:6-114
1dRVP-3linL04L:6-114
1eRVP-3linL05L:6-114
1fRVP-3linL06L:6-114
1gRVP-3linL07L:6-114
1hRVP-3linL08L:6-114
1iRVP-3linL09L:6-114
1jRVP-3linL10L:6-114
1kRVP-3linL11L:6-114
1lRVP-3linL12L:6-114

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (Q82134_9DELA | Q82134)
molecular function
    GO:0004190    aspartic-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

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  3lin
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  Q82134_9DELA | Q82134
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  Q82134_9DELA | Q82134
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q82134_9DELA | Q82134: 3liq 3lit 3liv 3lix 3liy 3wsj 4ydf

(-) Related Entries Specified in the PDB File

2b7f 3lin 3lit 3liv 3lix 3liy