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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE SUGAR PHOSPHATE ISOMERASE (AFE_0303) FROM ACIDITHIOBACILLUS FERROOXIDANS ATCC 23270 AT 1.85 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  15 Dec 09  (Deposition) - 29 Dec 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Afe_0303, Putative Sugar Phosphate Isomerase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Sugar Phosphate Isomerase (Afe_0303) From Acidithiobacillus Ferrooxidans Atcc 23270 A 1. 85 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE SUGAR PHOSPHATE ISOMERASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AFE_0303, AFE_2805
    Organism Scientific: ACIDITHIOBACILLUS FERROOXIDANS
    Organism Taxid: 243159
    Strain: ATCC 23270 / DSM 14882 / NCIB 8455

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 40)

Asymmetric/Biological Unit (4, 40)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2CXS4Ligand/Ion3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
3EDO14Ligand/Ion1,2-ETHANEDIOL
4MSE19Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:9 , ALA A:10 , GLN A:11 , HOH B:232 , HOH D:183BINDING SITE FOR RESIDUE CL A 162
02AC2SOFTWARESER A:14 , LYS A:34 , LEU A:49 , GLN A:51 , HOH A:239 , HOH A:561 , TYR D:72 , LEU D:74BINDING SITE FOR RESIDUE CXS A 164
03AC3SOFTWAREALA A:101 , ASP D:2 , THR D:3BINDING SITE FOR RESIDUE EDO A 165
04AC4SOFTWARELYS A:5 , VAL A:40 , GLY A:41 , HOH A:255 , ALA D:150 , ASP D:151 , HOH D:193BINDING SITE FOR RESIDUE EDO A 166
05AC5SOFTWARESER A:58 , HIS A:62 , GLU A:69 , HIS A:104BINDING SITE FOR RESIDUE EDO A 167
06AC6SOFTWAREARG A:4 , LEU A:7 , GLU A:12 , LYS B:135 , ARG D:153BINDING SITE FOR RESIDUE CL B 162
07AC7SOFTWARESER B:14 , LYS B:34 , LEU B:49 , GLN B:51 , EDO B:164 , HOH B:213 , HOH B:224 , HOH B:409 , HOH B:438 , TYR C:72 , LEU C:74BINDING SITE FOR RESIDUE CXS B 163
08AC8SOFTWARECXS B:163 , HOH B:173 , HOH B:206 , HOH B:416BINDING SITE FOR RESIDUE EDO B 164
09AC9SOFTWARESER B:58 , HIS B:62 , GLU B:69 , VAL B:71 , HIS B:104 , HOH B:470BINDING SITE FOR RESIDUE EDO B 165
10BC1SOFTWARELYS B:77 , GLY B:78 , THR B:79 , SER B:107 , ASP B:109 , GLY B:110 , HOH B:526 , HOH B:720BINDING SITE FOR RESIDUE EDO B 166
11BC2SOFTWARETYR B:87 , PRO B:88 , HOH B:183 , HOH B:420 , THR C:9BINDING SITE FOR RESIDUE EDO B 167
12BC3SOFTWAREPRO A:88 , HOH A:505 , ARG B:4 , LYS B:5 , EDO B:169 , HOH B:176BINDING SITE FOR RESIDUE EDO B 168
13BC4SOFTWARETYR A:87 , PRO A:88 , HOH A:505 , ARG B:4 , EDO B:168 , HOH B:204 , ARG D:4 , HOH D:296BINDING SITE FOR RESIDUE EDO B 169
14BC5SOFTWAREHOH B:200 , HOH B:238BINDING SITE FOR RESIDUE EDO B 170
15BC6SOFTWARETYR B:72 , LEU B:74 , SER C:14 , LYS C:34 , LEU C:49 , HOH C:192 , HOH C:426 , HOH C:468 , HOH C:712BINDING SITE FOR RESIDUE CXS C 162
16BC7SOFTWARESER C:58 , HIS C:62 , GLU C:69 , HIS C:104 , HOH C:440BINDING SITE FOR RESIDUE EDO C 163
17BC8SOFTWARELYS C:77 , GLY C:78 , THR C:79 , SER C:107 , ASP C:109 , GLY C:110 , HOH C:227BINDING SITE FOR RESIDUE EDO C 164
18BC9SOFTWARETYR A:72 , LEU A:74 , SER D:14 , LYS D:34 , LEU D:49 , HOH D:180 , HOH D:346 , HOH D:437 , HOH D:516 , HOH D:580BINDING SITE FOR RESIDUE CXS D 162
19CC1SOFTWAREARG D:136 , MSE D:149 , VAL D:154BINDING SITE FOR RESIDUE EDO D 163
20CC2SOFTWARESER D:58 , HIS D:62 , GLU D:69 , HIS D:104BINDING SITE FOR RESIDUE EDO D 164

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3L2H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3L2H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3L2H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3L2H)

(-) Exons   (0, 0)

(no "Exon" information available for 3L2H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:158
 aligned with B7J8Z8_ACIF2 | B7J8Z8 from UniProtKB/TrEMBL  Length:161

    Alignment length:158
                             1                                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149        
         B7J8Z8_ACIF2     - -MDTRKLLLTAQEISRMKGEHKVHFLNPGAVRVNKSLGDAVGLRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRLDQDVVDYPNQHKRLYRNNGEWNLVDMADIRVLRE 157
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh.eehhhhhhhh..eeeee..eeeeeeeeeehhhhhh...eeeeeeee..........ee....eeeeeee..eeeee..eeeee....eeee......eeee......eeeeeeee...eeeeee....eeeeee..eeeeee.hhheeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l2h A   0 GmDTRKLLLTAQEISRmKGEHKVHFLNPGAVRVNKSLGDAVGLRHmGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTmENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRLDQDVVDYPNQHKRLYRNNGEWNLVDmADIRVLRE 157
                             |       9      | 19        29        39     |  49        59        69        79  |     89        99       109       119       129       139       149        
                             |             16-MSE                       45-MSE                               82-MSE                                                            149-MSE    
                             1-MSE                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:159
 aligned with B7J8Z8_ACIF2 | B7J8Z8 from UniProtKB/TrEMBL  Length:161

    Alignment length:159
                             1                                                                                                                                                             
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149         
         B7J8Z8_ACIF2     - -MDTRKLLLTAQEISRMKGEHKVHFLNPGAVRVNKSLGDAVGLRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRLDQDVVDYPNQHKRLYRNNGEWNLVDMADIRVLREP 158
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh.eehhhhhhhh..eeeee..eeeeeeeeeehhhhhh...eeeeeeee..........ee....eeeeeee..eeeee..eeeee....eeee......eeee......eeeeeeee...eeeeeehhh.eeeeee..eeeeee.hhheeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l2h B   0 GmDTRKLLLTAQEISRmKGEHKVHFLNPGAVRVNKSLGDAVGLRHmGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTmENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRLDQDVVDYPNQHKRLYRNNGEWNLVDmADIRVLREP 158
                             |       9      | 19        29        39     |  49        59        69        79  |     89        99       109       119       129       139       149         
                             1-MSE         16-MSE                       45-MSE                               82-MSE                                                            149-MSE     


Chain C from PDB  Type:PROTEIN  Length:158
 aligned with B7J8Z8_ACIF2 | B7J8Z8 from UniProtKB/TrEMBL  Length:161

    Alignment length:158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        
         B7J8Z8_ACIF2     1 MDTRKLLLTAQEISRMKGEHKVHFLNPGAVRVNKSLGDAVGLRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRLDQDVVDYPNQHKRLYRNNGEWNLVDMADIRVLREP 158
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhh.eehhhhhhhh..eeeee..eeeeeeeeeehhhhhh...eeeeeeee..........ee....eeeeeee..eeeee..eeeee....eeee......eeee......eeeeeeee...eeeeeehhh.eeeeee..eeeeee.hhheeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3l2h C   1 mDTRKLLLTAQEISRmKGEHKVHFLNPGAVRVNKSLGDAVGLRHmGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTmENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRLDQDVVDYPNQHKRLYRNNGEWNLVDmADIRVLREP 158
                            |       10     |  20        30        40    |   50        60        70        80 |      90       100       110       120       130       140       150        
                            1-MSE         16-MSE                       45-MSE                               82-MSE                                                            149-MSE     


Chain D from PDB  Type:PROTEIN  Length:156
 aligned with B7J8Z8_ACIF2 | B7J8Z8 from UniProtKB/TrEMBL  Length:161

    Alignment length:156
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151      
         B7J8Z8_ACIF2     2 DTRKLLLTAQEISRMKGEHKVHFLNPGAVRVNKSLGDAVGLRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRLDQDVVDYPNQHKRLYRNNGEWNLVDMADIRVLRE 157
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ----------------------------------------------Cupin_2-3l2hD01 D:48-120                                                 ------------------------------------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------Cupin_2-3l2hD02 D:48-120                                                 ------------------------------------- Pfam domains (2)
           Pfam domains (3) ----------------------------------------------Cupin_2-3l2hD03 D:48-120                                                 ------------------------------------- Pfam domains (3)
           Pfam domains (4) ----------------------------------------------Cupin_2-3l2hD04 D:48-120                                                 ------------------------------------- Pfam domains (4)
         Sec.struct. author hhhh.eehhhhhhhh..eeeee..eeeeeeeeeehhhhhh...eeeeeeee..........ee....eeeeeee..eeeee..eeeee....eeee......eeee......eeeeeeee...eeeee.....eeeeee..eeeeee...eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3l2h D   2 DTRKLLLTAQEISRmKGEHKVHFLNPGAVRVNKSLGDAVGLRHmGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTmENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQRLDQDVVDYPNQHKRLYRNNGEWNLVDmADIRVLRE 157
                                    11    |   21        31        41   |    51        61        71        81|       91       101       111       121       131       141       151      
                                         16-MSE                       45-MSE                               82-MSE                                                            149-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3L2H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3L2H)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: Cupin (179)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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