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(-) Description

Title :  DOUBLE OCTAMER STRUCTURE OF RETINOSCHISIN, A CELL-CELL ADHESION PROTEIN OF THE RETINA
 
Authors :  G. Tolun, C. Vijayasarathy, R. Huang, Y. Zeng, Y. Li, A. C. Steven, P. A. S J. B. Heymann
Date :  12 Apr 16  (Deposition) - 11 May 16  (Release) - 25 May 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  4.10
Chains :  Asym. Unit :  O
Biol. Unit 1:  O  (16x)
Keywords :  Discoidin Domain, Double Octamer, Adhesion Protein, X-Linked Retinoschisis, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Tolun, C. Vijayasarathy, R. Huang, Y. Zeng, Y. Li, A. C. Steven, P. A. Sieving, J. B. Heymann
Paired Octamer Rings Of Retinoschisin Suggest A Junctional Model For Cell-Cell Adhesion In The Retina.
Proc. Natl. Acad. Sci. Usa V. 113 5287 2016
PubMed-ID: 27114531  |  Reference-DOI: 10.1073/PNAS.1519048113

(-) Compounds

Molecule 1 - RETINOSCHISIN
    Chains: O
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: 11109-E01
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: BACMID
    Fragment: UNP RESIDUES 24-224
    Gene: RS1, XLRS1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RS1, X-LINKED JUVENILE RETINOSCHISIS PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : O
Biological Unit 1 (16x): O

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3JD6)

(-) Sites  (0, 0)

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(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1O:63 -O:219
2O:110 -O:142

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Cys O:63 -Pro O:64

 Sequence-Structure Mapping

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(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain O from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........ee........hhh.eee.......................................eeeeeeeeeeeeeeeee..........eeeeeee.......ee..........ee.......eeeeeeeeeeeeeeeeeeee........eeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jd6 O  58 DCIPECPYHKPLGFESGEVTPDQITCSNPEQYVGWYSSWTANKARLNSQGFGCAWLSKFQDSSQWLQIDLKEIKVISGILTQGRCDIDEWMTKYSVQYRTDERLNWIYYKDQTGNNRVFYGNSDRTSTVQNLLRPPIISRFIRLIPLGWHVRIAIRMELLECVSKCA 224
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217
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 Classification and Annotation

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (17, 17)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        XLRS1_HUMAN | O15537: 5n6w

(-) Related Entries Specified in the PDB File

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