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(-) Description

Title :  CRYO-EM RECONSTRUCTION OF QUASI-HPV16 COMPLEX WITH H263.A2 FAB
 
Authors :  J. Guan, S. Hafenstein
Date :  19 Nov 14  (Deposition) - 06 May 15  (Release) - 03 Jun 15  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  13.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K,L,M  (60x)
Keywords :  L1 Pentamer, Quasi-Hpv16, L1 Capsomer, Rosie Online, Virus-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Guan, S. M. Bywaters, S. A. Brendle, H. Lee, R. E. Ashley, A. M. Makhov J. F. Conway, N. D. Christensen, S. Hafenstein
Structural Comparison Of Four Different Antibodies Interacting With Human Papillomavirus 16 And Mechanisms Of Neutralization.
Virology V. 483 253 2015
PubMed-ID: 25996608  |  Reference-DOI: 10.1016/J.VIROL.2015.04.016

(-) Compounds

Molecule 1 - H263.A2 LIGHT CHAIN
    Chains: L, J, K, M
    Fragment: VARIABLE DOMAIN FAB
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 2 - H263.A2 HEAVY CHAIN
    Chains: H, F, G, I
    Fragment: VARIABLE DOMAIN FAB
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 3 - L1
    Chains: A, B, C, D, E
    Fragment: UNP RESIDUES 47-500
    Organism Scientific: HUMAN PAPILLOMAVIRUS TYPE 16
    Organism Taxid: 333760
    Synonym: L1 PROTEIN, MAJOR CAPSID PROTEIN L1

 Structural Features

(-) Chains, Units

  12345678910111213
Asymmetric Unit : ABCDEFGHIJKLM
Biological Unit 1 (60x): ABCDEFGHIJKLM

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3J8W)

(-) Sites  (0, 0)

(no "Site" information available for 3J8W)

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1F:22 -F:92
2G:22 -G:92
3H:22 -H:92
4I:22 -I:92
5J:23 -J:88
6K:23 -K:88
7L:23 -L:88
8M:23 -M:88

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Thr L:7 -Pro L:8
2Ser L:94 -Pro L:95
3Thr J:7 -Pro J:8
4Ser J:94 -Pro J:95
5Thr K:7 -Pro K:8
6Ser K:94 -Pro K:95
7Thr M:7 -Pro M:8
8Ser M:94 -Pro M:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3J8W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3J8W)

(-) Exons   (0, 0)

(no "Exon" information available for 3J8W)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:421
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhheeeeeeeeee...eeeee.....ee......eee........eeeeee...................eeeeeeeeeeeeee........eeeeee.....................eeeee...eeeeeeee....eeeeeee................eeeeeee.....ee.......hhhhhh......hhhhhh..eeeehhhhhhhh.......eeeeeeeeeeeeeee...ee....hhhhh...hhhhhh.....eeeeee...ee........eee...........hhh.eeeeeeee......eeeeee........hhh.eeeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhh..........eeee.......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3j8w A   20 AVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL  474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399   ||  443       453       463       473 
                                                                                                                                                                                                                                                                                                                                                                                                                         403|                                    
                                                                                                                                                                                                                                                                                                                                                                                                                          438                                    


Chain B from PDB  Type:PROTEIN  Length:421
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhheeeeeeeeee...eeeee.....ee......eee........eeeeee...................eeeeeeeeeeeeee........eeeeee.....................eeeee...eeeeeeee....eeeeeee................eeeeeee.....ee.......hhhhhh......hhhhhh..eeeehhhhhhhh.......eeeeeeee...eeee...ee....hhhhh...hhhhhh.....eeee.....ee........eee...........hhh.eeeeeeee......eeeeee........hhh.eeeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhh..........eeee.......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3j8w B   20 AVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL  474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399   ||  443       453       463       473 
                                                                                                                                                                                                                                                                                                                                                                                                                         403|                                    
                                                                                                                                                                                                                                                                                                                                                                                                                          438                                    


Chain C from PDB  Type:PROTEIN  Length:421
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhheeeeeeeeee...eeeee.....ee......eee........eeeeee...................eeeeeeeeeeeeee........eeeeee.....................eeeee...eeeeeeee....eeeeeee................eeeeeee.....ee.......hhhhhh......hhhhhh..eeeehhhhhhhh.......eeeeeeee...eeee...ee....hhhhh...hhhhhh.....eeee.....ee........eee...........hhh.eeeeeeee......eeeeee........hhh.eeeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhh..........eeee.......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3j8w C   20 AVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL  474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399   ||  443       453       463       473 
                                                                                                                                                                                                                                                                                                                                                                                                                         403|                                    
                                                                                                                                                                                                                                                                                                                                                                                                                          438                                    


Chain D from PDB  Type:PROTEIN  Length:421
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhheeeeeeeeee...eeeee.....ee......eee........eeeeee...................eeeeeeeeeeeeee........eeeeee.....................eeeee...eeeeeeee....eeeeeee................eeeeeee.....ee.......hhhhhh......hhhhhh..eeeehhhhhhhh.......eeeeeeee...eeee...ee....hhhhh...hhhhhh.....eeee.....ee........eee...........hhh.eeeeeeee......eeeeee........hhh.eeeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhh..........eeee.......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3j8w D   20 AVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL  474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399   ||  443       453       463       473 
                                                                                                                                                                                                                                                                                                                                                                                                                         403|                                    
                                                                                                                                                                                                                                                                                                                                                                                                                          438                                    


Chain E from PDB  Type:PROTEIN  Length:421
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhheeeeeeeeee...eeeee.....ee......eee........eeeeee...................eeeeeeeeeeeeee........eeeeee.....................eeeee...eeeeeeee....eeeeeee................eeeeeee.....ee.......hhhhhh......hhhhhh..eeeehhhhhhhh.......eeeeeeee...eeee...ee....hhhhh...hhhhhh.....eeee.....ee........eee...........hhh.eeeeeeee......eeeeee........hhh.eeeeeeeeeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhh..........eeee.......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3j8w E   20 AVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL  474
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399   ||  443       453       463       473 
                                                                                                                                                                                                                                                                                                                                                                                                                         403|                                    
                                                                                                                                                                                                                                                                                                                                                                                                                          438                                    


Chain F from PDB  Type:PROTEIN  Length:118
                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.....eeeeee....hhhhh.eeeeee.....eeeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeeeeee..eeeeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                3j8w F    4 LQQSGAELARPGASVKLSCKASGYTFISYWMQWVKQRPGQGLEWIGAIYPGDGATRYTQKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYYCARPSYYDYDVTWFAYWGQGTLVTVS  112
                                    13        23        33        43       52A        62        72        82|||     89        99 ||||| 104        
                                                                           52A                            82A||               100A||||            
                                                                                                           82B|                100B|||            
                                                                                                            82C                 100C||            
                                                                                                                                 100D|            
                                                                                                                                  100E            


Chain G from PDB  Type:PROTEIN  Length:118
                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.....eeeeee....hhhhh.eeeeee.....eeeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeeeeee..eeeeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                3j8w G    4 LQQSGAELARPGASVKLSCKASGYTFISYWMQWVKQRPGQGLEWIGAIYPGDGATRYTQKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYYCARPSYYDYDVTWFAYWGQGTLVTVS  112
                                    13        23        33        43       52A        62        72        82|||     89        99 ||||| 104        
                                                                           52A                            82A||               100A||||            
                                                                                                           82B|                100B|||            
                                                                                                            82C                 100C||            
                                                                                                                                 100D|            
                                                                                                                                  100E            


Chain H from PDB  Type:PROTEIN  Length:118
                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.....eeeeee....hhhhh.eeeeee.....eeeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeeeeee..eeeeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                3j8w H    4 LQQSGAELARPGASVKLSCKASGYTFISYWMQWVKQRPGQGLEWIGAIYPGDGATRYTQKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYYCARPSYYDYDVTWFAYWGQGTLVTVS  112
                                    13        23        33        43       52A        62        72        82|||     89        99 ||||| 104        
                                                                           52A                            82A||               100A||||            
                                                                                                           82B|                100B|||            
                                                                                                            82C                 100C||            
                                                                                                                                 100D|            
                                                                                                                                  100E            


Chain I from PDB  Type:PROTEIN  Length:118
                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.....eeeeee....hhhhh.eeeeee.....eeeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeeeeee..eeeeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                3j8w I    4 LQQSGAELARPGASVKLSCKASGYTFISYWMQWVKQRPGQGLEWIGAIYPGDGATRYTQKFKGKATLTADKSSSTAYMQLSSLTSEDSAVYYCARPSYYDYDVTWFAYWGQGTLVTVS  112
                                    13        23        33        43       52A        62        72        82|||     89        99 ||||| 104        
                                                                           52A                            82A||               100A||||            
                                                                                                           82B|                100B|||            
                                                                                                            82C                 100C||            
                                                                                                                                 100D|            
                                                                                                                                  100E            


Chain J from PDB  Type:PROTEIN  Length:109
                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeee...eeeeee...hhhhheeeeeee...........eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                3j8w J    1 DIVMTQTPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAETLAEGVPSRFSGSGSGTQFSLRINSLQPEDFGSYYCQHHYVSPLTFGAGTKLELKRA  109
                                    10        20        30        40        50        60        70        80        90       100         


Chain K from PDB  Type:PROTEIN  Length:109
                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeee...eeeeee...hhhhheeeeeee...........eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                3j8w K    1 DIVMTQTPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAETLAEGVPSRFSGSGSGTQFSLRINSLQPEDFGSYYCQHHYVSPLTFGAGTKLELKRA  109
                                    10        20        30        40        50        60        70        80        90       100         


Chain L from PDB  Type:PROTEIN  Length:109
                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeee...eeeeee...hhhhheeeeeee...........eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                3j8w L    1 DIVMTQTPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAETLAEGVPSRFSGSGSGTQFSLRINSLQPEDFGSYYCQHHYVSPLTFGAGTKLELKRA  109
                                    10        20        30        40        50        60        70        80        90       100         


Chain M from PDB  Type:PROTEIN  Length:109
                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeee...eeeeee...hhhhheeeeeee...........eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                3j8w M    1 DIVMTQTPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAETLAEGVPSRFSGSGSGTQFSLRINSLQPEDFGSYYCQHHYVSPLTFGAGTKLELKRA  109
                                    10        20        30        40        50        60        70        80        90       100
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3J8W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3J8W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3J8W)

(-) Gene Ontology  (10, 19)

Asymmetric Unit(hide GO term definitions)

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(no "Sites" information available for 3j8w)
 
  Cis Peptide Bonds
    Ser J:94 - Pro J:95   [ RasMol ]  
    Ser K:94 - Pro K:95   [ RasMol ]  
    Ser L:94 - Pro L:95   [ RasMol ]  
    Ser M:94 - Pro M:95   [ RasMol ]  
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  3j8w
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  Q4VRM0_HPV16 | Q4VRM0
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  VL1_HPV16 | P03101
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    Age Related Information: GenAge

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    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
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Access by UniProt ID/Accession number
  Q4VRM0_HPV16 | Q4VRM0
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  VL1_HPV16 | P03101
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q4VRM0_HPV16 | Q4VRM0: 3j6r 3j7g 3j8v 3j8z
        VL1_HPV16 | P03101: 1dzl 3j6r 3j7g 3j8v 3j8z 3jba 5kep 5keq
UniProtKB/TrEMBL
        Q4VRM0_HPV16 | Q4VRM0: 2r5h

(-) Related Entries Specified in the PDB File

3j8v 3j8z